bioRxivDevelopmental BiologyPreprint
Signaling and transcriptional networks governing late synovial joint development
Qin BianiD, Yu‐Hao ChengiD, Emily Y. SuiD, Yuqi TaniD, Dong Won KimiD, Hong WangiD, Sooyeon YooiD, Seth BlackshawiD, Patrick CahaniD
Abstract
BackgroundDuring synovial joint development, cavitation marks the end of the emergence of new cell types and the onset of the consolidation of cell type specific programs. However, the transcriptional programs that regulate this crucial stage prior to joint maturation are incompletely characterized. Gdf5-lineage cells give rise to the majority of joint constituents such as articular cartilage, meniscus, ligament, and tendon. Therefore, to explore pre-maturation of the synovial joint, we performed single cell RNA-Seq analysis of 1,306 Gdf5-lineage cells from the murine knee joint at E17.5. ResultsUsing computational analytics and in situ hybridization, we identified nine sub-states contributing to articular cartilage, meniscus, cruciate ligament, synovium, lining, and surrounding fibrous tissue. We identified a common progenitor population that is predicted to give rise to ligamentaocytes, articular chondrocytes, and lining cells. We further found that while a large number of signaling pathways orchestrate the differentiation of this progenitor to either ligamentocytes or to lining cells, only continued FGF signaling guides these cells to a default chondrocyte fate. ConclusionsOur single cell transcriptional atlas is a resource that can be used to better understand and further study synovial joint development and the reactivation of embryonic programs in diseases such as osteoarthritis.
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A single cell transcriptional atlas of early synovial joint development
Qin Bian, Yu‐Hao Cheng, … Patrick Cahan·DevelopmentPeer-reviewed·Jun 24, 2020
- A spatial and single-cell transcriptomic atlas of the embryonic synovial joint and its explant model
Sharon E.S. Onggo, Ji-Hye Yea, … Patrick Cahan·bioRxiv·Oct 20, 2026
- Single-cell chromatin and transcriptome dynamics of Synovial Fibroblasts transitioning from homeostasis to pathology in modelled TNF-driven arthritis
M. Armaka, D. Konstantopoulos, … G. Kollias·Genome MedicinePeer-reviewed·Jul 26, 2022
- Single-cell transcriptomics reveals chondrocyte state transitions and ECM remodeling in osteoarthritic knee cartilage
Bo Zhu, Xu Han, Yunqi Liang·bioRxiv·Jun 29, 2026
- Leveraging single cell multiomic analyses to identify factors that drive human chondrocyte cell fate
Divya Venkatasubramanian, Gayani Senevirathne, … April M. Craft·bioRxiv·Jun 12, 2024
- NFATc1 negatively determines chondrocyte differentiation in articular cartilage progenitors
Fan Zhang, Yuanyuan Wang, … Xianpeng Ge·eLifePeer-reviewed·Feb 15, 2023