bioRxivScientific Communication & Education
Nanoscape, a data-driven 3D real-time interactive virtual cell environment
S. R. Kadir, A. Lilja, N. Gunn, C. Strong, R. T. Hughes, B. J. Bailey, J. Rae, R. G. Parton, J. McGhee
Abstract
Knowledge of cellular and structural biology has reached unprecedented levels of detail. In conjunction with advances in 3D computer visualisation techniques this has allowed exploration of cellular ultrastructure and environments by a virtual user. The extraction and integration of relevant scientific information, along with consideration of the best representation of data, is often a bottleneck in the visualisation process for many 3D biomedical artists. Here we introduce Nanoscape, a collaborative project between 3D computer artists, computer graphics developers, and cell biologists that enables a user to navigate a cell in a complex 3D computer visualised environment. We combine actual data from various scientific disciplines (including structural biology, cell biology and multiple microscopic techniques) and apply artistic expression and design aesthetics to create a unique new experience where a real-time virtual explorer can traverse a cell surface, observe and interact with a more scientifically accurate cell surface environment.
- assay: imaging
- research focus: cell type annotation
- research focus: spatial domain detection
- approach: experimental assay
- approach: microscopy & imaging analysis
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Nanoscale investigation in 3D scaffolds of cell-material interactions for tissue-engineering
D. Iandolo, F. A. Pennacchio, … F. Santoro·bioRxiv·Aug 2, 2018
- Real-Time Multi-Angle Projection Imaging of Biological Dynamics
B.-J. Chang, E. Sapoznik, … R. P. Fiolka·bioRxiv·Oct 29, 2020
- Multiplexed Detection of Molecular Interactions with DNA Origami Engineered Cells in 3-D Collagen Matrices
M. Shahhosseini, P. Beshay, … C. Castro·bioRxiv·Feb 4, 2022
- Rendering protein structures inside cells at the atomic level with Unreal Engine
M. Chen·bioRxiv·Dec 8, 2023
- Three dimensional parallelized RESOLFT nanoscopy for volumetric live cell imaging
A. Boden, F. Pennacchietti, I. Testa·bioRxiv·Jan 9, 2020
- BEHAV3D-Explorer enables natural language-assisted profiling of 3D cellular dynamics
Sam de Blank, Emilio Rios-Jimenez, … Maria Alieva·bioRxiv·Nov 9, 2026