Genomic analyses of glycine decarboxylase neurogenic mutations yield a large scale prediction model for prenatal disease.
Joseph D. FarrisiD, Md. Suhail Alam†iD, Arpitha Mysore Rajashekara, Kasturi HaldariD
Abstract
Glycine decarboxylase (GLDC) is a mitochondrial protein, hundreds of mutations in which cause a neurometabolic disorder Non-ketotic Hyperglycinemia (NKH), associated with elevation of plasma glycine. But why a mutation induces severe or attenuated neurological disease is poorly understood. We combined a human multiparametric mutation scale that separates severe from attenuated clinical, neurological disease, with new in silico tools to assess 238 of 255 NKH mutations in murine GLDC. We unified novel murine and human genome level-analyses across a linear scale of neurological severity, with in vivo evidence from mice engineered with a top-ranking attenuated mutation and another mutation >10 times more pathogenic and integrated the data in a model of pre- and post-natal disease outcomes, relevant for over a hundred major and minor neurogenic mutations. Our findings suggest that highly severe neurogenic mutations predict fatal, prenatal disease that can be remedied by metabolic supplementation of dams, in absence of amelioration of persistent and age-dependent elevation of plasma glycine.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 8
- FWCI
- 0.53
- Field percentile
- top 45%
- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Large scale analyses of genotype-phenotype relationships of glycine decarboxylase mutations and neurological disease severity.
Joseph D. Farris, Barbara Calhoun, … Kasturi Haldar·PLoS Computational BiologyPeer-reviewed·May 18, 2020
- Variants in glycine decarboxylase activate mechanisms of mitochondrial energy metabolism in the brain.
Alejandro Lopez‐Ramirez, Andrew J Worth, … Kasturi Haldar·bioRxiv·Jul 12, 2025
- Deep postnatal phenotyping of a new mouse model of nonketotic hyperglycinemia
Michael A. Swanson, Hua Jiang, … Johan L.K. Van Hove·Journal of Inherited Metabolic DiseasePeer-reviewed·Jun 5, 2024
- AAV-mediated expression of mouse or human GLDC normalises metabolic biomarkers in a GLDC-deficient mouse model of Non-Ketotic Hyperglycinemia
Kit‐Yi Leung, Chloe Santos, … Nicholas D. E. Greene·Molecular Genetics and MetabolismPeer-reviewed·May 15, 2024
- Gene therapy prevents disease and death from non-ketotic hyperglycinemia
Alejandro Lopez‐Ramirez, Adviti Bali, … Kasturi Haldar·bioRxiv·Mar 26, 2025
- Mouse models of NADK2 deficiency analyzed for metabolic and gene expression changes to elucidate pathophysiology
G C Murray, Preeti Bais, … Robert W. Burgess·Human Molecular GeneticsPeer-reviewed·Jul 7, 2022