bioRxivImmunologyPreprint
Immune aging captures complementary aging biology beyond epigenetic clocks
Kohav Tal-Porath, Timothy J Few-CooperiD, Shai S. Shen-OrriD
Abstract
Biological aging clocks are typically evaluated through competitive benchmarking, implicitly assuming that a single metric can sufficiently capture the complexities of aging1-6. Here, we tested an alternative hypothesis: that distinct clock types capture orthogonal dimensions of aging and therefore yield greater value when integrated. Using the Framingham Heart Study, we compared the immune-aging metric, IMM-AGE, with established DNA methylation clocks and found that integrated models consistently outperformed single-clock approaches. To investigate the basis of this complementarity, we derived IMMAGE-Epi, a 22-CpG methylation surrogate of IMM-AGE which exhibited minimal overlap with canonical epigenetic clock CpGs, suggesting that immune aging is associated with a distinct methylomic feature and pathway space rather than representing a reformulation of existing clock architectures. Together, our findings support an emerging multidimensional model of biological aging in which integrating orthogonal biological clocks may offer greater translational utility than competitive single-clock optimization.
- organism: human
- assay: DNA methylation
- research focus: benchmarking
- research focus: cell type annotation
- research focus: gene regulatory network inference
- approach: statistical model
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- High-dimensional Ageome Representations of Biological Aging across Functional Modules
Kejun Ying, Alexander Tyshkovskiy, … Vadim N. Gladyshev·bioRxiv·Sep 17, 2024
- ComputAgeBench: Epigenetic Aging Clocks Benchmark
Dmitrii V. Kriukov, Evgeniy Efimov, … Dmitry V. Dylov·ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD)Peer-reviewed·Aug 3, 2025
- Development of a novel epigenetic clock resistant to changes in immune cell composition
Alan Tomusiak, Ariel Floro, … Eric M. Verdin·bioRxiv·Mar 1, 2023
- A network approach to DNA methylation clocks
Antón Carcedo, Seong-Gyu Yang, … Ludvig Lizana·bioRxiv·Jun 20, 2026
- Systems Age: A single blood methylation test to quantify aging heterogeneity across 11 physiological systems
Raghav Sehgal, Yaroslav Markov, … Morgan E. Levine·Nature AgingPeer-reviewed·Sep 15, 2025
- When to Trust Epigenetic Clocks: Avoiding False Positives in Aging Interventions.
Daniel S. Borrus, Raghav Sehgal, … Albert Higgins‐Chen·Aging CellPeer-reviewed·Oct 1, 2026