bioRxivMicrobiologyPreprint
Active control of surface immobilization in the foraging behavior of Paramecium
Ali HosseiniiD, Wilder BoydeniD, Célia Fosse, Marcel StimbergiD, Robert D Guy, Romain BretteiD
Abstract
Paramecium is a common freshwater ciliate, a unicellular swimming eukaryote that feeds on bacteria. Since the discovery that its motility is controlled by action potentials, which earned it the nickname of "swimming neuron", many studies have documented the effect of various stimuli on its behavior, as well as their physiological basis, highlighting the richness of adaptive behavior in this unicellular organism. The logic of its autonomous behavior has received comparably less attention. For example, when Paramecium encounters a surface, it may slide or avoid it by a directional change, triggered by an action potential, or it may immobilize on the surface, a behavior often called thigmotaxis. Here we ask why and how Paramecium immobilizes on surfaces. With long term behavioral tracking, we show that this variable behavior is a component of Paramecium's foraging behavior in the presence of bacteria, where the organism alternates between exploring and stopping on surfaces to feed. This immobilization is physiologically controlled by a calcium influx. Using mutant strains, high speed imaging, particle image velocimetry and hydrodynamics simulation, we further show that surface immobilization occurs by an inhibition of locomotor cilia, while oral cilia continue beating strongly. These findings open the perspective of studying the physiological control of foraging in a unicellular organism, a complex ecologically relevant behavior potentially involving sensory processing, memory, decision making, and motor control.
- assay: imaging
- research focus: cell signaling & trafficking
- approach: experimental assay
- approach: simulation
In-depth summary
Claude Opus 5.5 · xhigh effort · 8 Nov 2026 · from the full text of version 1 (21 Sept 2026) · CC BY 4.0
Paramecium tetraurelia alternates fast swimming with minutes-long surface immobilization when bacteria are present; stops require calcium influx and come from halting locomotor cilia while oral cilia keep beating.
Why and how the ciliate Paramecium stops on surfaces (thigmotaxis) was unknown; earlier accounts invoked ciliary stickiness tied to sexual maturation or anchoring by trichocysts. This work links the behavior to feeding on bacteria and shows it is an actively controlled change in ciliary beating, ruling out passive falling, trichocyst anchoring and stickiness.
Key results
ShownIn bacterized medium the population splits into fast swimmers and cells stopped on both top and bottom surfaces while feeding; individual cells stop for a few minutes and then leave, so the set of immobile positions turns over within minutes, resembling animal foraging.
Whole-drop tracking (n = 55, 2 h): immobile fraction exceeded 50% within 20 min, then settled near 25%; swimming speeds bimodal (near 0 and near 500 µm/s); immobile positions fully replaced over 5 min; stops lasted 193 ± 271 s (mean ± s.d.), roughly exponentially distributed. Stopped cells showed ciliary currents carrying bacteria and moving food vacuoles. · Foraging behavior of Paramecium; Figure legends
ShownBacteria act as a trigger for immobilization, not as an attachment substrate: in bacteria-filtered medium almost all cells keep swimming, while washing cells into a sterile Na+-free calcium-potassium solution produces similar transient stops on glass or plastic, which added Na+ prevents.
Filtered medium (n = 38): almost all cells kept swimming, vs progressive stopping and clustering in bacterized medium (n = 24). Washed into 1 mM CaCl2 + 4 mM KCl, most stationary (n = 18) and many logarithmic (n = 19) cells stopped, on both top and bottom glass surfaces, and also on a Petri dish; most swam again after 6 h. Adding 11.5 mM Na+ abolished this (n = 50 vs 50). · Foraging behavior of Paramecium; Surface immobilization in inorganic solutions; Figure legends
ShownSurface immobilization requires entry of extracellular calcium: partial calcium chelation and the channel blocker ruthenium red both suppress it, and ruthenium red also slows population growth.
0.37 mM EGTA cut maximal immobilization to 18% (n = 51; p = 3·10^-8 vs control, Welch's t-test), whereas 0.32 mM EGTA (n = 44) and control (n = 56) reached nearly 50%; 0.4 mM EGTA killed all cells. 10 µM ruthenium red almost completely blocked immobilization (n = 30 vs 38 control), and cell counts rose about 11% over 3 h vs 34% in control. · Surface immobilization requires a calcium influx; Figure legends
SuggestedCells do not anchor with trichocysts; instead an immobilized cell drives a flow that is strong along the oral groove and anterior end but weak dorsally, which a Stokeslet model reproduces when locomotor ciliary force is below 0.1 of oral ciliary force.
A trichless mutant (no trichocysts) still attached transiently. PIV with 1 µm beads (Fig. 5 plus two more cells each in Fig. S2): strongly asymmetric flow around spontaneously immobilized cells vs symmetric flow around cells glued with Cell-Tak in Na+-supplemented solution. Simulated locomotor:oral traction ratios below 0.1 matched immobilized cells; 0.5-1 matched glued cells. · Paramecium immobilizes by inhibiting its…; Figure legends
SuggestedHigh-speed imaging shows many dorsal locomotor cilia stopped or passively floating even where they do not touch the surface, while mouth and oral-groove cilia keep beating at frequencies similar to glued cells; the authors report the mouth beat frequency as a new observation.
500-700 Hz imaging of 4 spontaneously immobilized vs 5 Cell-Tak-glued cells: mouth 71±2 vs 76±8 Hz (p=0.19), oral groove 52±3 vs 46±3 Hz (p=0.11), dorsal 17±1 vs 24±2 Hz (p=0.008, one-sided Mann-Whitney). Time-averaged movies showed immobile dorsal cilia only in spontaneously immobilized cells; glued cells had none apart from a few stuck to a trichocyst. · Paramecium immobilizes by stopping locomotor…; Figure legends
Methods, data and reproducibility
Whole-drop video tracking (20 Hz, 2 to 9 h) of Paramecium tetraurelia strain 51 under pharmacological (EGTA, ruthenium red) and ionic manipulations quantified surface immobilization; posture z-stacks, particle image velocimetry, 500-700 Hz imaging of ciliary beating and a regularized-Stokeslet flow model compared spontaneously immobilized cells with cells glued by Cell-Tak.
- Whole-drop tracking of growing cells in bacterized wheatgrass medium (Klebsiella pneumoniae KpGe as food), 2 h · Paramecium tetraurelia (strain 51) · n = 55 cells
- Bacterized vs bacteria-filtered (0.22 µm) culture medium, observed simultaneously for 2 h · Paramecium tetraurelia (strain 51) · n = 24 (bacterized) and 38 (filtered) cells
- Calcium chelation with EGTA in bacterized medium · Paramecium tetraurelia (strain 51) · n = 56 control, 44 (0.32 mM EGTA), 51 (0.37 mM EGTA)
- Ruthenium red (10 µM) in bacterized medium · Paramecium tetraurelia (strain 51) · n = 30 treated vs 38 control
- Washed cells in sterile CaCl2/KCl solution on glass coverslips or a Petri dish · Paramecium tetraurelia (strain 51) · n = 18 stationary, 19 logarithmic
- Washing solution with vs without 11.5 mM Na+ · Paramecium tetraurelia (strain 51) · n = 50 vs 50 cells
- trichless mutant strain (lacks trichocysts) washed in inorganic solution · Paramecium
- Posture z-stacks, PIV and high-speed ciliary imaging of immobilized vs Cell-Tak-glued cells · Paramecium tetraurelia (strain 51) · n = 21 (posture); 4 vs 5 (beat frequency)
- Methods & tools
- norfair (Kalman-filter tracking), trackpy, openpiv, Regularized Stokeslets with method of images, Cell-Tak bioadhesive, Ruthenium red, EGTA, DAPI staining (autogamy check), Nikon SMZ800N stereomicroscope with Basler ace 2 camera, ZEISS Axio Observer with Axiocam 807 mono, Particle image velocimetry (1 µm polystyrene beads), ParameciumDB culture protocols
- Code
- https://github.com/romainbrette/Paramecium-thigmotaxishttps://github.com/mstimberg/online_bg_removal
- Data & accessions
- https://zenodo.org/uploads/21509306
- Assay conditions & compute
- Recordings up to 12 hours are processed online by background subtraction; at full field this is 14 TB of raw images, which are deleted after processing. No hardware or run times are given.
- Reproducibility gaps
- No software versions or environment files; numerical details of the hydrodynamic model are deferred to Supplementary Methods not included here; the data link is a zenodo.org/uploads/ address rather than a DOI or record page.
Limitations (6)
- Calcium dependence could be tested only by partial chelation, because Paramecium does not survive without calcium (0.4 mM EGTA killed all cells) and the calcium concentration of the culture medium is not precisely known. · stated by the authors
- The sensing pathway is unresolved: TRP channel involvement is proposed only because ruthenium red targets such channels, and how bacteria are detected (plausibly on contact) and how locomotor cilia are selectively stopped remain open questions. · stated by the authors
- Immobile cilia are hard to detect, since only those protruding beyond the cell outline are visible; in bacterized drops cell clustering made immobile counts unreliable, so swimming counts were reported instead. · stated by the authors
- The feeding benefit is inferred, not measured: it rests on bacteria dependence and growth inhibition by ruthenium red, and whether surface contact improves feeding efficiency is described as disputed. · stated by the authors
- The ciliary mechanism rests on few cells (4 vs 5 for beat frequency, a handful per condition for PIV) imaged in the Na+-free inorganic solution rather than bacterized medium, and control cells differ in both ionic medium and attachment method (Cell-Tak). · noted in this summary
- Reported EGTA doses disagree: 0.32, 0.37 and 0.4 mM in Results and legends vs 0.32 and 0.38 µM in Methods, so the effective chelator concentration is ambiguous. · noted in this summary
Read this if you study behavior or ciliary motility in unicellular eukaryotes, or want a whole-drop tracking plus PIV and Stokeslet-modeling workflow for linking cell-level behavior to ciliary beating patterns.
- Citations
- 1
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- An electrophysiological and kinematic model of Paramecium, the "swimming neuron"
Irene Elices, Anirudh Kulkarni, … Romain Brette·PLoS Computational BiologyPeer-reviewed·Feb 9, 2023
- Interaction of the mechanosensitive microswimmer Paramecium with obstacles
N. Escoubet, R. Brette, … A. M. Prevost·bioRxiv·Dec 20, 2022
- Self-organizing physical and biochemical interactions explain diverse behaviours in Physarum polycephalum
Linnéa Gyllingberg, Abid Haque, … Simon Garnier·bioRxiv·May 12, 2026
- Paramecium Learning: New Insights and Modifications
Abolfazl Alipour, Mohammadreza Dorvash, … Gholamreza Hatam·bioRxiv·Nov 29, 2017
- Physical confinement regulates transition in nematode motility
Saheli Dey, M Sreepadmanabh, … Tapomoy Bhattacharjee·bioRxiv·Jan 22, 2025
- A simple device to immobilize protists for electrophysiology and microinjection
A. Kulkarni, N. Escoubet, … R. Brette·Journal of Experimental BiologyPeer-reviewed·Jun 17, 2020