bioRxivMolecular BiologyPreprint
Suppressing Primer-Driven Nonspecific Amplification in LAMP Using TrueLAMP
Abstract
Loop-mediated isothermal amplification (LAMP) enables rapid nucleic acid detection but is vulnerable to primer-driven nonspecific amplification that can produce false-positive results. We developed TrueLAMP, a colorimetric LAMP formulation containing an inhibitor that suppresses nonspecific amplification while preserving target-dependent amplification. All 65 no-template controls across these studies remained negative, corresponding to 100% observed specificity. Using SARS-CoV-2 as a model and the Lamb primer set as a representative benchmark, TrueLAMP achieved a limit of detection of 250 copies per reaction with 95% detection probability. Endpoint color remained stable during extended incubation, reducing the need for time-critical readout. TrueLAMP was compatible with readily available heating devices, including a convection oven, water bath, and temperature-controlled smart mug. Independent evaluations in two external laboratories using additional primer-template systems, including DNA targets, further supported suppression of nonspecific amplification and sequence-dependent target detection. Together, these findings support TrueLAMP as a practical approach for improving the reliability of LAMP detection while retaining a simple isothermal workflow.
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A paper based microfluidic platform combining LAMP-CRISPR/Cas12a for fluorometric detection of nucleic acids
A. Sen, C. Morris, … M. F. Broom·bioRxiv·Mar 2, 2023
- Enhancing Colorimetric LAMP Amplification Speed and Sensitivity with Guanidine Chloride
Y. Zhang, G. Ren, … N. A. Tanner·bioRxiv·Jun 3, 2020
- High-surety isothermal amplification and detection of SARS-CoV-2, including with crude enzymes
Sanchita Bhadra, Timothy E. Riedel, … Andrew D. Ellington·bioRxiv·Apr 13, 2020
- Portable real-time colorimetric LAMP-device for rapidquantitative detection of nucleic acids in crude samples
G. Papadakis, A. K. Pantazis, … E. Gizeli·Scientific ReportsPeer-reviewed·Mar 8, 2022
- A Robust, Low-Cost Instrument for Real-time Colorimetric Isothermal Nucleic Acid Amplification
F. Myers, B. Moffatt, … D. Mitra·bioRxiv·Aug 18, 2021
- Improving RT-LAMP Detection of SARS-CoV-2 RNA through Primer Set Selection and Combination
Yinhua Zhang, Nathan A. Tanner·PLoS ONEPeer-reviewed·Apr 1, 2022