MIEN: a deep-learning model for pocket-conditioned glycan pose and conformation discrimination
MIEN improves glycan pose ranking by distinguishing experimentally observed conformations from non-native ones in protein-carbohydrate interactions.
363,000+ bioRxiv and medRxiv preprints, including those later published in peer-reviewed journals, across 26 biological disciplines.
MIEN improves glycan pose ranking by distinguishing experimentally observed conformations from non-native ones in protein-carbohydrate interactions.
Christopher L. Hughes, Takashi D.Y. Kozai
This study investigates how PV and SOM interneurons respond to different microstimulation patterns and how their activation dynamics influence cortical network activity and adaptation.
Brendan Terry, Carine Stapel, Fátima Santos…·Wolf Reik
The paper identifies a non-catalytic repressor function of TET1 and an activating role of macroH2A.2 in bivalent chromatin during neuroectoderm differentiation.
William S. Salvia, Joshua S. Straub, Shiny Maity…·Songi Han
This paper demonstrates that a magnetic field modulates the formation of a covalent photoadduct in AsLOV2, enhancing signaling through spin-selective radical-pair reactions.
Khushi C. Hiremath, Diana A. Hobbs, Danielle M.R. Hettish…·Florence L. Chiang
This study uses hidden Markov modeling to analyze dynamic functional connectivity in MS patients, finding altered state occupancy and transitions associated with disability and cognition.
Ioannis G. Riziotis, Harry Wilders, Andrea Cairoli…·Jacob T. Bush
This study identifies factors governing cysteine detection in chemoproteomics using machine learning and statistical filtering, showing that peptide properties and abundance are key determinants.
Leonie Müller‐Jensen, Debanjana Chakravarty, Gianmarco Bellucci…·Tammy Smith
The paper identifies innate immune activation and CMV-specific antibody reactivity as early markers of preclinical NMOSD, preceding clinical onset by over 12 years.
Abbey K. Schedler, Katrina McCollough, Frey Rogers…·Jenna T. B. Ekwealor
The paper examines how coastal fog exposure affects epiphytic cryptogam communities and finds little variation in abundance, reproduction, and community composition despite strong microclimate differences.
Meghadeepa Sarkar, Sannidhya De, Thomas John Pucadyil
This study identifies Dynamin-2 as the fission factor for SNX1-coated endosomal tubules, showing it is required for tubule scission and cargo recycling.
Weijia Fan, Roman V. Kuranov, Menglin Shi…·Hao F. Zhang
This paper introduces an improved SS-vis-OCT system with extended imaging depth and sensitivity for biological samples.
Elise J. Needham, Jing Hua Zhao, Nick Hirschmüller…·Adam S. Butterworth
This study conducts the first genome-wide association study of the phosphoproteome, identifying genetic variants influencing protein phosphorylation and linking them to disease traits.
H. Reşi̇t Akçakaya, Natasha L. M. Mannion, Jonah Morreale…·Philip J.K. McGowan
This paper presents a protocol to identify and rank species needing urgent management action for Target 4 of the Global Biodiversity Framework using IUCN Red List data.
Mohammad Amin Eskandari, Susanne Ulmer, Doralycia Carranza Zuñiga…·Timo Betz
The paper investigates intracellular mechanical properties and structural organization in RPE1 cells, finding no significant spatial mechanical patterns or correlations between structures and mechanical properties.
Zhouqian Jiang, Lachlan J. N. Waddell, Inesh Amarnath…·Benjamin R. Lichman
This study identifies and reconstitutes the biosynthetic pathway for Securinega alkaloids in Flueggea suffruticosa, revealing a connection to cyanogenic glucoside biosynthesis.
Anisha K. Hundal, Defne Urman, Araad Algouneh…·Karim Mekhail
The paper identifies a distributed architectural code involving cytoskeletal, membrane, and lipid regulators that governs nuclear reshaping during DNA repair.
Masashi Mori, Hidenori Tanaka, Misa Suzuki…·Hidenori Inohara
The paper identifies HPV-associated premalignant lesions in tonsils and suggests oral HR-HPV mRNA as a potential biomarker for early detection.
Manuel Gallone, Shyam Ravidath, Srihith Madireddy
The paper audits a benchmarking framework for single-cell perturbation models, revealing flaws in metric interpretation and calibration, and identifies a specific calibration failure in split-conformal prediction.
Renata Flávia de Carvalho, Natália Carolina de Almeida Silva, Rafael Vidal, Magdalena Vaio
This study examines genomic diversity in South American lowland maize landraces from Uruguay and Brazil, finding geographic patterns in genome size, heterochromatic knobs, and repetitive sequences.
Iris Ka-Yi Chat, Steve W. Cole, Julienne E. Bower
This study finds that sickness-like depressive symptoms in breast cancer survivors are more strongly linked to proinflammatory gene expression and myeloid cell abundance than negative affect symptoms.