Author

A. D. S. Filipe

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:host-pathogen & immune response· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

E. C. Thomson· 2 shared L. Tong· 2 shared Q. Gu· 2 shared A. Ho· 1 shared A. Patel· 1 shared A. R. Ademun· 1 shared A. Ssekagiri· 1 shared B. Brennan· 1 shared

Activity by Year

2023-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersMicrobiology

E. C. Thomson

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

MicrobiologybioRxivPreprintSep 29, 2023

Temperature elevation synergises with and enhances the type-I IFN-mediated restriction of MPXV

C. Davis, I. Epifano, K. Dee…·C. Boutell

This study shows that fever enhances the host's type-I IFN response to restrict MPXV replication.

DOI 10.1101/2023.09.29.560106

humanbulk RNA-seq

𝕏 PostBluesky

MicrobiologybioRxivAug 1, 2023

Phenotyping the virulence of SARS-CoV-2 variants in hamsters by digital pathology and machine learning

G. R. Meehan, V. Herder, J. Allan…·M. Palmarini

This study develops quantitative pipelines using digital pathology and machine learning to assess the virulence of SARS-CoV-2 variants in hamsters, showing that some Omicron sub-lineages have regained virulence.

DOI 10.1371/journal.ppat.1011589

mousebulk RNA-seq

𝕏 PostBluesky

MicrobiologybioRxivPreprintMar 10, 2023

Ticks; a reservoir for virus emergence at the human-livestock interface in Uganda

S. A. Atim, S. Ashraf, M. Niebel…·E. C. Thomson

The paper sequences ticks in Uganda to identify viruses, finding 22 species including 8 pathogens and 5 novel viruses, with orthonairoviruses being prevalent.

DOI 10.1101/2023.03.10.532017

metagenomicsdeep learning

𝕏 PostBluesky