Author

A. G. Pedersen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4 Cancer Biology· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 5 Assay:whole-genome sequencing· 4 Organism:human· 3 Research Focus:phylogenetics / evolution· 2 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:comparative / phylogenetic analysis· 1

Frequent Co-Authors

A. Botner· 1 shared A. Dechesne· 1 shared A. E. Boklund· 1 shared A. Fomsgaard· 1 shared A. G. Qvesel· 1 shared A. Margaryan· 1 shared A. Palomo· 1 shared A. S. Olesen· 1 shared

Activity by Year

2017-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperMicrobiology

A. Botner

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Author profile →

6 papers

Recent·Most cited

Emergence and spread of SARS-CoV-2 variants from farmed mink to humans and back during the epidemic in Denmark, June-November 2020.

T. B. Rasmussen, A. G. Qvesel, A. G. Pedersen, A. S. Olesen, J. Fonager, M. Rasmussen, R. N. Sieber, M. Stegger, F. F. C. Artavia, M. J. F. Goedknegt, E. R. Thuesen, L. Lohse, S. Mortensen, A. Fomsgaard, A. E. Boklund, , G. J. Belsham

This study tracks the emergence and spread of SARS-CoV-2 variants between mink and humans in Denmark, identifying multiple transmission routes and estimating cross-species transmission events.

PLOS Pathogens · Jul 1, 2024Peer-reviewedMicrobiology

Hundreds of viral families in the healthy infant gut

S. A. Shah, L. Deng, J. Thorsen, A. G. Pedersen, M. B. Dion, J. Castro Mejia, R. Silins, F. O. Romme, R. Sausset, E. O. Ndela, M. H. Hjemso, M. A. Rasmussen, T. Redgwell, G. A. Vestergaard, Y. Zhang, , D. S. Nielsen

This study manually resolves viral dark matter in a large infant gut virome dataset, identifying over ten thousand viral species across 248 families and expanding bacteriophage taxonomy.

bioRxiv · Jul 2, 2021 · PreprintMicrobiology

31,600-year-old human virus genomes support a Pleistocene origin for common childhood infections

S. Holtsmark Nielsen, L. van Dorp, C. J. Houldcroft, A. G. Pedersen, M. E. Allentoft, L. Vinner, A. Margaryan, E. Pavlova, V. Chasnyk, P. Nikolskiy, V. Pitulko, V. N. Pimenoff, F. Balloux, M. Sikora

The paper analyzes ancient virus genomes from 31,600-year-old human remains, showing that common childhood infections originated in the Pleistocene.

bioRxiv · Jun 28, 2021 · PreprintEvolutionary Biology

Co-circulation of multiple influenza A variants in swine harboring genes from seasonal human and swine influenza viruses

P. Ryt-Hansen, J. S. Krog, S. O. Breum, C. K. Hjulsager, R. Trebbien, A. G. Pedersen, L. E. Larsen

The paper reports increased swIAV prevalence in Danish swine from 2011 to 2018, identifying 17 genotypes including reassortants with human gene segments and evidence of positive selection in hemagglutinin.

bioRxiv · Jul 28, 2020Microbiology

A subset of lung cancer cases shows robust signs of homologous recombination deficiency associated genomic aberration based molecular signatures

M. Diossy, Z. Sztupinszki, J. Borcsok, M. Krzystanek, V. Tisza, S. Spisak, O. Rusz, J. Timar, I. Csabai, J. Moldvay, A. G. Pedersen, D. Szuts, Z. Szallasi

The paper identifies HRD-associated mutational signatures in lung cancer cases and links them to PARP inhibitor sensitivity and platinum response.

bioRxiv · Nov 28, 2019Cancer Biology

Comparative Genomics Sheds Light On Niche Differentiation And The Evolutionary History Of Comammox Nitrospira

A. Palomo, A. G. Pedersen, S. J. Fowler, A. Dechesne, T. Sicheritz-Ponten, B. F. Smets

This paper presents the first comparative genomic analysis of comammox Nitrospira, revealing their unique adaptations to oligotrophy and hypoxia and tracing the evolutionary origins of their ammonium oxidation pathway from beta-AOB.

bioRxiv · May 16, 2017Microbiology