Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
F. Beghini, L. J. McIver, A. Blanco-Miguez, L. Dubois, F. Asnicar, S. Maharjan, A. Mailyan, A. M. Thomas, P. Manghi, M. Valles-Colomer, G. Weingart, Y. Zhang, M. Zolfo, C. Huttenhower, E. A. Franzosa, N. Segata
The paper introduces bioBakery 3, a set of tools for microbial community analysis, improving taxonomic, functional, and strain-level profiling with applications to CRC and IBD datasets.
bioRxiv · Nov 19, 2020Microbiology