Author

M. Valles-Colomer

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Research Focus:clustering· 2 Research Focus:differential expression· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Approach:deep learning· 1 Research Focus:ecology & biodiversity· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

A. Blanco-Miguez· 1 shared A. M. Thomas· 1 shared A. Mailyan· 1 shared C. Huttenhower· 1 shared C. Shi· 1 shared D. Jansen· 1 shared E. A. Franzosa· 1 shared F. Asnicar· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperMicrobiology

A. Blanco-Miguez

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Author profile →

2 papers

Recent·Most cited

Successional stages in infant gut microbiota maturation

L. Beller, W. Deboutte, G. Falony, S. Vieira Silva, R. Tito, M. Valles-Colomer, L. Rymenans, D. Jansen, L. Van Espen, M. I. Papadaki, C. Shi, K. C. Yinda, M. Zeller, K. Faust, M. Van Ranst, , J. Matthijnssens

The paper investigates infant gut microbiota maturation over the first year, identifying three conserved stages and associating disease and antibiotic use with stage regression.

bioRxiv · Jun 25, 2021Microbiology

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

F. Beghini, L. J. McIver, A. Blanco-Miguez, L. Dubois, F. Asnicar, S. Maharjan, A. Mailyan, A. M. Thomas, P. Manghi, M. Valles-Colomer, G. Weingart, Y. Zhang, M. Zolfo, C. Huttenhower, E. A. Franzosa, N. Segata

The paper introduces bioBakery 3, a set of tools for microbial community analysis, improving taxonomic, functional, and strain-level profiling with applications to CRC and IBD datasets.

bioRxiv · Nov 19, 2020Microbiology