Author

P. Manghi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Approach:statistical model· 3 Research Focus:clustering· 2 Approach:deep learning· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

C. Huttenhower· 3 shared F. Asnicar· 3 shared M. Zolfo· 3 shared N. Segata· 3 shared A. Blanco-Miguez· 2 shared O. Rota-Stabelli· 2 shared S. Maharjan· 2 shared A. Cereseto· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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3 shared papersMicrobiology

C. Huttenhower

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Author profile →

3 papers

Recent·Most cited

Discovering and exploring the hidden diversity of human gut viruses using highly enriched virome samples

M. Zolfo, A. Silverj, A. Blanco-Miguez, P. Manghi, O. Rota-Stabelli, V. Heidrich, J. Jensen, S. Maharjan, E. Franzosa, C. Menni, A. Visconti, F. Pinto, M. Ciciani, C. Huttenhower, A. Cereseto, , N. Segata

The paper presents a method to discover new human gut viruses using enriched virome samples and reports over 162,000 novel viral sequences.

bioRxiv · Feb 19, 2024 · PreprintMicrobiology

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

F. Beghini, L. J. McIver, A. Blanco-Miguez, L. Dubois, F. Asnicar, S. Maharjan, A. Mailyan, A. M. Thomas, P. Manghi, M. Valles-Colomer, G. Weingart, Y. Zhang, M. Zolfo, C. Huttenhower, E. A. Franzosa, N. Segata

The paper introduces bioBakery 3, a set of tools for microbial community analysis, improving taxonomic, functional, and strain-level profiling with applications to CRC and IBD datasets.

bioRxiv · Nov 19, 2020Microbiology

The Prevotella copri complex comprises four distinct clades that are underrepresented in Westernised populations

A. Tett, K. D. Huang, F. Asnicar, H. Fehlner-Peach, E. Pasolli, N. Karcher, F. Armanini, P. Manghi, K. Bonham, M. Zolfo, F. De Filippis, C. Magnabosco, R. Bonneau, J. Lusingu, J. Amuasi, , N. Segata

The study identifies four distinct clades within the Prevotella copri complex, showing reduced prevalence in Westernised populations compared to non-Westernised ones.

bioRxiv · Apr 9, 2019Microbiology