Author

A. Pavlova

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 4 Evolutionary Biology· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:host-pathogen & immune response· 4 Assay:structural biology· 3 Approach:experimental assay· 2 Organism:human· 2 Organism:virus· 2 Approach:biophysical modeling· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:development & morphogenesis· 1

Frequent Co-Authors

A. Acharya· 4 shared Y. T. Pang· 4 shared C. Chipot· 2 shared D. L. Lynch· 2 shared D. Lynch· 2 shared J. C. Gumbart· 2 shared J. Gumbart· 2 shared J. M. Parks· 2 shared

Activity by Year

2017-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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4 shared papersBiophysics

A. Acharya

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Tissue-intrinsic γδ T cells critically regulate Tissue-Resident Memory CD8 T cells

M. Munoz-Ruiz, M. Llorian, R. D'Antuono, A. Pavlova, A. M. Mavrigiannaki, D. Mckenzie, B. Garcia-Cassani, M. L. Iannitto, A. Jandke, D. Ushakov, A. Adrian C. Hayday

This study shows that tissue-intrinsic γδ T cells regulate TRM cells via a feedback loop involving IFNγ and PD-L1, affecting TRM function and cancer response.

bioRxiv · Jan 19, 2022 · PreprintImmunology

SARS-CoV-2 spike opening dynamics and energetics reveal the individual roles of glycans and their collective impact

Y. T. Pang, A. Acharya, D. Lynch, A. Pavlova, J. Gumbart

This study uses molecular dynamics simulations to analyze how glycans affect the opening dynamics and energetics of the SARS-CoV-2 spike protein, revealing their individual and collective roles in stabilizing the closed and open states.

bioRxiv · Aug 12, 2021Biophysics

ACE2 glycans preferentially interact with the RBD of SARS-CoV-2 over SARS-CoV

A. Acharya, D. Lynch, A. Pavlova, Y. T. Pang, J. Gumbart

The paper identifies differences in ACE2 glycan interactions with SARS-CoV-2 and SARS-CoV RBDs, showing N322 enhances SARS-CoV-2 binding while N90 may provide protection.

bioRxiv · Apr 29, 2021Biophysics

Critical interactions for SARS-CoV-2 spike protein binding to ACE2 identified by machine learning

A. Pavlova, Z. Zhang, A. Acharya, D. L. Lynch, Y. T. Pang, Z. Mou, J. M. Parks, C. Chipot, J. C. Gumbart

This study identifies critical residues for SARS-CoV-2 spike protein binding to ACE2 using machine learning and free energy calculations, showing how specific mutations affect binding affinity.

bioRxiv · Mar 19, 2021Biophysics

Inhibitor binding influences the protonation states of histidines in SARS-CoV-2 main protease

A. Pavlova, D. L. Lynch, I. Daidone, L. Zanetti-Polzi, M. D. Smith, C. Chipot, D. W. Kneller, A. Kovalevsky, L. Coates, A. A. Golosov, C. J. Dickson, C. Velez-Vega, J. S. Duca, J. V. Vermaas, Y. T. Pang, , J. C. Gumbart

This study uses molecular dynamics simulations to investigate how inhibitor binding affects the protonation states of histidines in SARS-CoV-2 main protease, showing their impact on structural stability and inhibitor binding.

bioRxiv · Sep 7, 2020Biophysics

Mitochondrial-nuclear interactions maintain geographic separation of deeply diverged mitochondrial lineages in the face of nuclear gene flow

H. E. Morales, A. Pavlova, N. Amos, R. Major, A. Kilian, C. Greening, P. Sunnucks

The paper examines mitonuclear interactions in a passerine bird, finding that adaptive co-introgression maintains geographic separation of mitochondrial lineages despite nuclear gene flow.

bioRxiv · Jun 12, 2017Evolutionary Biology