Author

A. R. Raphenya

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

A. G. McArthur· 2 shared A. Banerjee· 1 shared A. E. Jones· 1 shared A. Ghalami· 1 shared A. J. McGeer· 1 shared A. J. Pickering· 1 shared A. L. Glascock· 1 shared B. P. Alcock· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersMicrobiology

A. G. McArthur

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Author profile →

2 papers

Recent·Most cited

Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline

D. Lu, K. L. Kalantar, V. T. Chu, A. L. Glascock, E. S. Guerrero, N. Bernick, X. Butcher, K. Ewing, E. Fahsbender, O. Holmes, E. Hoops, A. E. Jones, R. Lim, S. McCanny, L. Reynoso, , C. R. Langelier

The paper develops an open-source, cloud-based tool for detecting pathogens and antimicrobial resistance genes in metagenomic and whole-genome sequencing data, demonstrating its application across clinical and environmental studies.

bioRxiv · Apr 12, 2024 · PreprintMicrobiology

Isolation, sequence, infectivity and replication kinetics of SARS-CoV-2

A. Banerjee, J. A. Nasir, P. Budylowski, L. Yip, P. Aftanas, N. Christie, A. Ghalami, K. Baid, A. R. Raphenya, J. A. Hirota, M. S. Miller, A. J. McGeer, M. A. Ostrowski, R. A. Kozak, A. G. McArthur, , S. Mubareka

The paper isolates SARS-CoV-2 from two patients, sequences the virus, and tests its infectivity in human immune cells, finding that PBMCs are not permissive to infection.

bioRxiv · Apr 11, 2020 · PreprintMicrobiology