Author

Alireza Ahmadi

Leiden University Medical Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Organism:mouse· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Ahmed Essam MahfouziD· 1 shared Aki MinodaiD· 1 shared Annemieke M Aartsma-RusiD· 1 shared Aurélie GoyenvalleiD· 1 shared Chung-Chau HoniD· 1 shared Haitao WangiD· 1 shared Haruka YabukamiiD· 1 shared Hironobu FujiwaraiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperNeuroscience

Ahmed Essam MahfouzORCID

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2 papers

Recent·Most cited

NeuroscienceiSciencePeer-reviewedJul 23, 2026

Evaluating exon-skipping therapies targeting the central nervous system in Duchenne muscular dystrophy using high-resolution spatial transcriptomics

Qirong Mao, Alireza Ahmadi, Sharon I. de Vries…·Pietro Spitali

This study uses spatial transcriptomics to evaluate exon-skipping therapies for DMD in the CNS, showing U7ex51 effectively restores full-length dystrophin isoforms in neurons.

DOI 10.1016/j.isci.2026.116906

mousespatial transcriptomics

𝕏 PostBluesky

GenomicsbioRxivPreprintNov 19, 2025

Epigenomic and transcriptomic germ-free ageing atlas reveals sterile inflammation as an intrinsic ageing feature

Ward Nijen Twilhaar, Jen-Chien Chang, Tommy W. Terooatea…·Aki Minoda

This study presents a single-cell epigenomic and transcriptomic atlas of aged mice under germ-free conditions, revealing sterile inflammation as an intrinsic ageing feature.

DOI 10.1101/2025.11.19.689100

mousescRNA-seq

𝕏 PostBluesky