Author

Anatoly Vasilyev

Intima Bioscience (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1

Frequent Co-Authors

Tilmann BürckstümmeriD· 2 shared Adam Krejčí· 1 shared Alexander TyakhtiD· 1 shared Anke Loregger· 1 shared Anna ElizarovaiD· 1 shared Anna PopenkoiD· 1 shared Anna Sieber· 1 shared Benjamin KlapholziD· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersBioinformatics

Tilmann BürckstümmerORCID

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3 papers

Recent·Most cited

Decoding Heterogenous Single-cell Perturbation Responses

Bicna Song, Dingyu Liu, Weiwei Dai, Natalie F. McMyn, Qingyang Wang, Dapeng Yang, Adam Krejčí, Anatoly Vasilyev, Nicole Untermoser, Anke Loregger, Dongyuan Song, Breanna M. Williams, Bess P. Rosen, Xiaolong Cheng, Lumen Chao, , Wei Li

The paper introduces a method to quantify diverse perturbation responses and discover novel biological insights in single-cell perturbation datasets.

bioRxiv · Oct 30, 2023 · PreprintBioinformatics

A Bioinformatic and Empiric Exploration of Prokaryotic Argonautes as Novel Programmable Endonuclease Systems

Šejla Šalic, Anna Sieber, Samir Barbaria, Anatoly Vasilyev, Elisavet Papadimou, Nevena Milosavljevic, Benjamin Klapholz, Rohan Sivapalan, Trevor N. Collingwood, Tom Henley, Modassir S. Choudhry, Tilmann Bürckstümmer

This study identifies and characterizes prokaryotic Argonautes (pAgos) as programmable endonucleases, showing their ability to cleave DNA in vitro with guide RNA/DNA and potential for gene editing.

bioRxiv · Mar 15, 2021 · PreprintMolecular Biology

Knomics-Biota - a system for exploratory analysis of human gut microbiota data

Daria A. Efimova, Alexander Tyakht, Anna Popenko, Anatoly Vasilyev, Ilya A. Altukhov, Nikita V. Dovidchenko, Vera Y. Odintsova, Natalia S. Klimenko, Robert I. Loshkarev, Maria Pashkova, Anna Elizarova, Viktoriya N. Voroshilova, Sergei Slavskii, Yury Pekov, E. D. Filippova, , Dmitry G. Alexeev

Knomics-Biota provides a web-based tool for exploratory analysis of human gut metagenomic data, enabling users to generate reports and visualize microbiota composition in relation to experimental factors and public datasets.

BioData Mining · Nov 6, 2018Peer-reviewedBioinformatics