Author

Ann S. Hammonds

Lawrence Berkeley National Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Genomics· 2

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Assay:ChIP-seq· 2 Organism:Drosophila· 2 Organism:C. elegans· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

S CelnikeriD· 2 shared Adri Tran-Pearson· 1 shared Alec VictorseniD· 1 shared Benjamin W. Booth· 1 shared Bridget C. LeariD· 1 shared Chau Huynh· 1 shared Clara Henriquez· 1 shared Dionne K. VafeadosiD· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersGenomics

S CelnikerORCID

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2 papers

Recent·Most cited

Binding profiles for 954 Drosophila and C. elegans transcription factors revealtissue specific regulatory relationships

Michelle M. Kudron, Louis Gevirtzman, Alec Victorsen, Bridget C. Lear, Jiahao Gao, Jinrui Xu, Swapna Samanta, Emily Frink, Adri Tran-Pearson, Chau Huynh, Dionne K. Vafeados, Ann S. Hammonds, William F. Fisher, Martha Wall, Greg Wesseling, , R Waterston

The paper presents a catalog of transcription factor binding sites in Drosophila and C. elegans, revealing tissue-specific regulatory relationships using machine learning.

bioRxiv · Jan 18, 2024 · PreprintGenomics

Exploiting regulatory heterogeneity to systematically identify enhancers with high accuracy

Hamutal Arbel, Sumanta Basu, William W. Fisher, Ann S. Hammonds, Kenneth H. Wan, Soo Hyung Park, Richard Weiszmann, Benjamin W. Booth, Soile V.E. Keränen, Clara Henriquez, Omid Shams Solari, Peter J. Bickel, Mark D. Biggin, S Celniker, James B. Brown

The paper identifies a class of enhancers with high prediction accuracy by focusing on regulatory heterogeneity in Drosophila, achieving 86.7% precision and 98% recall.

Proceedings of the National Academy of Sciences · Dec 31, 2018Peer-reviewedGenomics