Author

B. A. Cimini

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 2 Cancer Biology· 1 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Assay:imaging· 4 Research Focus:benchmarking· 3 Approach:microscopy & imaging analysis· 2 Approach:benchmark study· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Organism:human· 1 Research Focus:software / tool· 1

Frequent Co-Authors

A. E. Carpenter· 3 shared D. R. Stirling· 2 shared A. Goodman· 1 shared A. M. Lucas· 1 shared A. Schreiner· 1 shared A. Y. Berman· 1 shared C. J. Nelson· 1 shared C. Tromans-Coia· 1 shared

Activity by Year

2021-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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3 shared papersCell Biology

A. E. Carpenter

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Bridging Imaging Users to Imaging Analysis - A community survey

S. Sivagurunathan, S. Marcotti, C. J. Nelson, M. L. Jones, D. J. Barry, T. J. A. Slater, K. W. Eliceiri, B. A. Cimini

The paper surveys imaging users and developers to identify needs and gaps in image analysis tools and education, highlighting demands for documentation, tutorials, and user-friendly software.

bioRxiv · Jun 5, 2023Scientific Communication & Education

High-content microscopy reveals a morphological signature of bortezomib resistance

M. E. Kelley, A. Y. Berman, D. R. Stirling, B. A. Cimini, Y. Han, S. Singh, A. E. Carpenter, T. M. Kapoor, G. P. Way

The paper identifies a morphological signature of bortezomib resistance using high-content microscopy and shows it predicts treatment response in independent cell lines.

bioRxiv · May 2, 2023Cancer Biology

Assessing the performance of the Cell Painting assay across different imaging systems

C. Tromans-Coia, N. Jamali, H. S. Abbasi, K. A. Giuliano, M. Hagimoto, K. Jan, E. Kaneko, S. Letzsch, A. Schreiner, J. Z. Sexton, M. Suzuki, O. J. Trask, M. Yamaguchi, F. Yanagawa, M. Yang, , B. A. Cimini

The paper evaluates Cell Painting assay performance across different imaging systems, finding compatibility and identifying optimal settings for each.

bioRxiv · Feb 15, 2023Cell Biology

CellProfiler 4: Improvements in Speed, Utility and Usability

D. R. Stirling, M. J. Swain-Bowden, A. M. Lucas, A. E. Carpenter, B. A. Cimini, A. Goodman

CellProfiler 4 improves speed, utility, and usability through interface refinements, new modules, and performance optimizations for automated microscopy image analysis.

bioRxiv · Jun 30, 2021Cell Biology