Author

Benedict Choi

Arc Research Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Hani GoodarziiD· 2 shared Aiden Sababi· 1 shared Albertas NavickasiD· 1 shared Ali Poursina· 1 shared Ali Saberi· 1 shared Allen L. FengiD· 1 shared Arsham Mikaeili NaminiiD· 1 shared Daniel G. Deschler· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersCancer Biology

Hani GoodarziORCID

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2 papers

Recent·Most cited

Orphan Non-Coding RNAs Drive Tumorigenesis and Enable Pre-Diagnostic Detection in HPV-Negative Head and Neck Cancer

Hoang C B Nguyen, Lishi Li, Benedict Choi, Mehran Karimzadeh, Jack Ghannam, Jeffrey Wang, Yana Al-Inaya, Gjystina Lumaj, Fereydoun Hormozdiari, Allen L. Feng, Jeremy D. Richmon, Daniel G. Deschler, Mark Alex Varvares, Daniel L. Faden, Derrick T. Lin, Hani Goodarzi

This study identifies oncRNAs as drivers of HPV-negative head and neck cancer and shows their potential for pre-diagnostic detection.

bioRxiv · Dec 25, 2025 · PreprintCancer Biology

Accurate isoform quantification in bulk and single-cell RNA-seq by integrating multi-platform sequencing data and sequence-to-expression models

Michael J. Apostolides, Jichen Wang, Ali Saberi, Benedict Choi, Tabea Mittmann, Ali Poursina, Arsham Mikaeili Namini, Darian Salehi, Gabrielle Perron, Albertas Navickas, Larisa M. Soto, Aiden Sababi, Hani Goodarzi, Hamed Shateri Najafabadi

This paper introduces MPAQT, a framework that improves isoform quantification in bulk and single-cell RNA-seq by integrating short- and long-read data and using sequence-to-expression models.

bioRxiv · Jul 11, 2024 · PreprintBioinformatics