Author

C. R. Hubert

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 6

Signature Assays, Organisms & Methods

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Approach:experimental assay· 6 Assay:metagenomics· 6 Research Focus:host-pathogen & immune response· 3 Research Focus:cell type annotation· 2 Research Focus:clustering· 1 Research Focus:ecology & biodiversity· 1 Approach:genetic perturbation / CRISPR· 1 Approach:microscopy & imaging analysis· 1

Frequent Co-Authors

A. Chakraborty· 3 shared A. MacDonald· 3 shared J. E. Rattray· 3 shared N. Morrison· 3 shared C. Campbell· 2 shared C. Li· 2 shared D. Gittins· 2 shared J. Webb· 2 shared

Activity by Year

2021-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersMicrobiology

A. Chakraborty

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Author profile →

6 papers

Recent·Most cited

Novel oil-associated bacteria in Arctic seawater exposed to different nutrient biostimulation regimes

F. D. Davila Aleman, M. A. Bautista, J. McCalder, K. Jobin, S. M. C. Murphy, B. Else, C. R. Hubert

The paper investigates how nutrient addition affects Arctic marine microbial communities in oil-spill microcosms, identifying novel bacteria potentially involved in hydrocarbon degradation.

bioRxiv · Mar 22, 2024Microbiology

Polymer biodegradation by Halanaerobium promotes reservoir souring during hydraulic fracturing.

G. Scheffer, A. Chakraborty, K. Amundson, R. Khan, M. Wilkins, K. Wrighton, P. Evans, C. R. Hubert

The paper investigates how Halanaerobium metabolizes guar gum in produced water from hydraulic fracturing, showing that polymer biodegradation at 30°C generates fermentation intermediates that contribute to reservoir souring when introduced into subsurface environments at 60°C.

bioRxiv · Jun 16, 2023 · PreprintMicrobiology

SituSeq: An offline protocol for rapid and remote Nanopore amplicon sequence analysis

J. Zorz, C. Li, A. Chakraborty, D. Gittins, T. Surcon, N. Morrison, R. Bennett, A. MacDonald, C. R. Hubert

SituSeq enables rapid, offline analysis of 16S rRNA gene amplicons using Nanopore MinION and a laptop, validated across platforms with high sequence identity and community composition consistency.

bioRxiv · Oct 18, 2022 · PreprintMicrobiology

Bacterial anomalies in seabed sediments associated with deep water hydrocarbon seepage

C. Li, O. Adebayo, D. K. Ferguson, S. Wang, J. E. Rattray, M. Fowler, J. Webb, C. Campbell, N. Morrison, A. MacDonald, C. R. Hubert

This study uses 16S rRNA gene sequencing to identify bacterial anomalies in deep-sea sediments linked to hydrocarbon seepage, finding distinct microbial signatures associated with thermogenic and biogenic hydrocarbons.

bioRxiv · Oct 15, 2022 · PreprintMicrobiology

Geological processes mediate a subsurface microbial loop in the deep biosphere

D. Gittins, P.-A. Desiage, N. Morrison, J. E. Rattray, S. Bhatnagar, A. Chakraborty, J. Zorz, O. Horanszky, M. A. Cramm, J. Webb, A. MacDonald, M. Fowler, C. Campbell, C. R. Hubert

The paper investigates a subsurface microbial loop mediated by geological processes, showing thermophilic endospores migrate from deep oil reservoirs to the seabed and re-enter the geosphere through sedimentation.

bioRxiv · Oct 26, 2021 · PreprintMicrobiology

Extremely thermophilic endospores germinate and metabolise organic carbon in sediments heated to above 80°C

E. Bell, J. E. Rattray, K. Sloan, A. Sherry, G. Pilloni, C. R. Hubert

bioRxiv · Oct 10, 2021Microbiology