Author

Charles Cole

University of California, Santa Cruz

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Genomics· 4

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 4 Approach:experimental assay· 4 Research Focus:cell type annotation· 3 Assay:long-read sequencing· 3 Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Ashley ByrneiD· 4 shared Christopher VollmersiD· 4 shared Anna E. BeaudiniD· 2 shared E. Camilla ForsbergiD· 2 shared Roger VoldeniD· 2 shared Theron Palmer· 2 shared Hugh E. OlseniD· 1 shared Mark A. AkesoniD· 1 shared

Activity by Year

2017-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 34 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersGenomics

Ashley ByrneORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Complete characterization of the human immune cell transcriptome using accurate full-length cDNA sequencing

Charles Cole, Ashley Byrne, Matthew S. Adams, Roger Volden, Christopher Vollmers

The paper uses full-length cDNA sequencing to accurately characterize the human immune cell transcriptome, enabling HLA allele typing and adaptive immune receptor repertoire analysis.

Genome Research · Apr 1, 2020Peer-reviewedGenomics

R2C2: Improving nanopore read accuracy enables the sequencing of highly-multiplexed full-length single-cell cDNA

Roger Volden, Theron Palmer, Ashley Byrne, Charles Cole, Robert J. Schmitz, Richard Edward Green, Christopher Vollmers

R2C2 improves nanopore read accuracy for full-length single-cell cDNA sequencing, enabling more accurate isoform-level transcriptome analysis.

Proceedings of the National Academy of Sciences · Sep 10, 2018Peer-reviewedGenomics

Tn5Prime, a Tn5 based 5’ Capture Method for Single Cell RNA-seq

Charles Cole, Ashley Byrne, Anna E. Beaudin, E. Camilla Forsberg, Christopher Vollmers

Tn5Prime is a 5' capture method for RNA-seq that enables accurate transcription start site identification and transcriptome quantification in single cells and bulk samples.

Nucleic Acids Research · Feb 28, 2018Peer-reviewedGenomics

Nanopore Long-Read RNAseq Reveals Widespread Transcriptional Variation Among the Surface Receptors of Individual B cells

Ashley Byrne, Anna E. Beaudin, Hugh E. Olsen, Miten Jain, Charles Cole, Theron Palmer, Rebecca M. DuBois, E. Camilla Forsberg, Mark A. Akeson, Christopher Vollmers

The paper uses long-read RNAseq to identify and quantify complex isoforms in individual B cells, revealing widespread transcriptional variation in surface receptors and the antibody heavy chain locus.

Nature Communications · Jul 19, 2017Peer-reviewedGenomics