Author

D. A. Clark

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 3 Biophysics· 1

Signature Assays, Organisms & Methods

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Research Focus:host-pathogen & immune response· 2 Approach:statistical model· 2 Assay:cryo-EM· 1 Approach:deep learning· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:metagenomics· 1

Frequent Co-Authors

J. Ruprecht· 3 shared M. M. Rowland· 3 shared T. D. Forrester· 3 shared T. Levi· 3 shared B. K. Johnson· 2 shared J. B. Smith· 2 shared M. J. Wisdom· 2 shared A. Anandkumar· 1 shared

Activity by Year

2020-2021 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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Curved chords = mutual co-authorship

3 shared papersEcology

J. Ruprecht

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

A seasonal pulse of ungulate neonates influences space use by carnivores in a multi-predator, multi-prey system

J. Ruprecht, T. D. Forrester, N. J. Jackson, D. A. Clark, M. J. Wisdom, M. M. Rowland, J. B. Smith, K. M. Stewart, T. Levi

The paper examines how carnivores respond to seasonal ungulate neonates, finding that some actively search for high-density prey while others rely on incidental encounters.

bioRxiv · Dec 16, 2021Ecology

Intelligent Resolution: Integrating Cryo-EM with AI-driven Multi-resolution Simulations to Observe the SARS-CoV-2 Replication-Transcription Machinery in Action

A. Trifan, D. Gorgun, Z. Li, A. Brace, M. Zvyagin, H. Ma, A. R. Clyde, D. A. Clark, M. Salim, D. Hardy, T. Burnley, L. Huang, J. McCalpin, M. Emani, H. Yoo, , A. Ramanathan

This study develops an AI-driven multi-resolution simulation workflow to study SARS-CoV-2 RTC dynamics, combining cryo-EM with mesoscale simulations and AI methods.

bioRxiv · Oct 9, 2021 · PreprintBiophysics

Games of risk and reward in carnivore communities

J. Ruprecht, C. E. Eriksson, T. D. Forrester, D. B. Spitz, D. A. Clark, M. J. Wisdom, M. Bianco, M. M. Rowland, J. B. Smith, B. K. Johnson, T. Levi

The paper examines how dominant cougars influence subordinate carnivores through both provisioning and predation, revealing complex risk-reward interactions in a carnivore community.

bioRxiv · Jan 27, 2021 · PreprintEcology

Evaluating and integrating spatial capture-recapture models with data of variable individual identifiability

J. Ruprecht, C. Eriksson, T. D. Forrester, D. A. Clark, M. Wisdom, M. M. Rowland, B. K. Johnson, T. Levi

The paper evaluates spatial capture-recapture models using different data types to estimate wildlife population densities and finds hybrid models with multiple data sources provide the most precise estimates.

bioRxiv · Mar 27, 2020Ecology