Author

D. T. Auble

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:ChIP-seq· 2 Research Focus:chromatin & epigenetic regulation· 2 Organism:yeast· 2 Research Focus:host-pathogen & immune response· 1 Assay:metagenomics· 1 Organism:mouse· 1

Frequent Co-Authors

E. A. Hoffman· 2 shared S. Bekiranov· 2 shared S. J. Shetty· 2 shared B. Thompson· 1 shared C. Gilchrist· 1 shared G. B. Moreau· 1 shared H. Zaidi· 1 shared J. L. Leslie· 1 shared

Activity by Year

2017-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersBiochemistry

E. A. Hoffman

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Author profile →

3 papers

Recent·Most cited

Genome-scale chromatin interaction dynamic measurements for key components of the RNA Pol II general transcription machinery

K. Kupkova, S. J. Shetty, E. A. Hoffman, S. Bekiranov, D. T. Auble

The paper measures genome-scale chromatin interaction dynamics of RNA Pol II GTFs in budding yeast, revealing kinetic patterns linked to gene function and transcription rates.

bioRxiv · Jul 25, 2023Biochemistry

Gut microbiome communication with bone marrow regulates susceptibility to amebiasis

S. L. Burgess, J. L. Leslie, M. J. Uddin, N. Oakland, K. Watanabe, C. Gilchrist, G. B. Moreau, M. Saleh, M. Simpson, B. Thompson, D. T. Auble, S. Turner, N. Giallourou, J. Swann, Z. Pu, , W. A. Petri

The paper shows that introducing Clostridium scindens into the gut microbiota epigenetically alters bone marrow and provides protection against Entamoeba histolytica infection.

bioRxiv · Aug 7, 2019Microbiology

Second-generation method for analysis of chromatin binding using formaldehyde crosslinking kinetics

H. Zaidi, E. A. Hoffman, S. J. Shetty, S. Bekiranov, D. T. Auble

The paper improves the CLK method for analyzing chromatin binding kinetics by refining formaldehyde crosslinking conditions and revealing variability in crosslinking rates for different protein-DNA interactions.

bioRxiv · Jun 21, 2017Biochemistry