Author

Daniel Miller

Cincinnati Children's Hospital Medical Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Assay:ATAC-seq· 2 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1

Frequent Co-Authors

Carmy R. ForneyiD· 3 shared Leah Claire KottyaniD· 3 shared Matthew T. WeirauchiD· 3 shared Omer A. DonmeziD· 3 shared Sreeja ParameswaraniD· 3 shared John B. Harley· 2 shared Lee EdsalliD· 2 shared Mario Andres PujatoiD· 2 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Carmy R. ForneyORCID

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Author profile →

4 papers

Recent·Most cited

NeuroWeave-3D: Uncertainty-Aware Evidence Completion for Brain Tumor Segmentation with Missing MRI Modalities

Daniel Miller, Lukas Adrian Weber

NeuroWeave-3D improves brain tumor segmentation by handling missing MRI modalities through uncertainty-aware evidence completion and consistency checks.

bioRxiv · Nov 4, 2026 · PreprintBioinformatics

Epigenetic and Transcriptional Dysregulation in CD4+ T cells of Patients with Atopic Dermatitis

Amy Eapen, Sreeja Parameswaran, Carmy R. Forney, Lee Edsall, Daniel Miller, Omer A. Donmez, Katelyn Dunn, Xiaoming Lu, Marissa Granitto, Hope Rowden, Adam Z. Magier, Mario Andres Pujato, Xiaoting Chen, Kenneth M. Kaufman, David I Bernstein, , Leah Claire Kottyan

This study identifies epigenetic and transcriptional dysregulation in CD4+ T cells of atopic dermatitis patients, linking genetic risk variants to altered chromatin accessibility and NFKB1 binding.

Journal of Allergy and Clinical Immunology · Feb 1, 2022Peer-reviewedGenomics

Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci

Ted Hong, Sreeja Parameswaran, Omer A. Donmez, Daniel Miller, Carmy R. Forney, Michael Lape, Mariana Saint Just Ribeiro, Jun Liang, Lee Edsall, Albert Frank Magnusen, William E. Miller, Iouri Chepelev, John B. Harley, Bo Zhao, Leah Claire Kottyan, Matthew T. Weirauch

This study shows EBNA2 alters chromatin structure and gene expression at autoimmune risk loci, linking viral infection to genetic risk mechanisms in autoimmune diseases.

Genome Research · Dec 1, 2021Peer-reviewedGenomics

Genome-wide discovery of lupus genetic risk variant allelic regulatory activity

Xiaoming Lu, Xiaoting Chen, Carmy R. Forney, Omer A. Donmez, Daniel Miller, Sreeja Parameswaran, Ted Hong, Yongbo Huang, Mario Andres Pujato, Tareian A. Cazares, Emily R. Miraldi, John Ray, Carl G. de Boer, John B. Harley, Matthew T. Weirauch, Leah Claire Kottyan

The paper identifies 482 SLE risk variants with enhancer activity and characterizes allelic regulatory mechanisms at 27 risk loci using MPRA.

Nature Communications · Mar 12, 2021Peer-reviewedGenomics