Author

Daniel Perez

University Medical Center Hamburg-Eppendorf

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Assay:imaging· 2 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:flow cytometry· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Airam Vivanco-Estella· 1 shared Akash Gandhi· 1 shared Alejandro Almarza· 1 shared Alexander J. KnightsiD· 1 shared Alexus Roberts· 1 shared Alia Obeidat· 1 shared Alisa Johnson· 1 shared Ana Jordan-PaiziD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperPhysiology

Airam Vivanco-Estella

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Author profile →

2 papers

Recent·Most cited

A standardized, open-source, portable model for noninvasive joint injury in mice

Michael D. Newton, Lindsey Lammlin, Sofia Gonzalez-Nolde, Scarlet C. Howser, Isabelle Smith, Luke Stasikelis, Alexander J. Knights, Armen N. Akopian, Kyle Allen, Alejandro Almarza, Benjamin Russell Arenkiel, Maryam Aslam, Başak Dönertaş Ayaz, Yangjin Bae, Bruna Balbino de Paula, , Julia Younis

The paper introduces a standardized, open-source protocol for noninvasive joint injury in mice, resulting in post-traumatic osteoarthritis, and provides tools for reproducibility and analysis.

Osteoarthritis and Cartilage Open · Sep 17, 2025Peer-reviewedPhysiology

GOAT: Deep learning-enhanced Generalized Organoid Annotation Tool

Jan P. Bremer, Martin E. Baumdick, Marius S. Knorr, Lucy H.M. Wegner, Jasmin Wesche, Ana Jordan-Paiz, Johannes M. Jung, Andrew J. Highton, Julia Jäger, Ole Hinrichs, Sebastien Brias, Jennifer Niersch, Luisa Müller, Renée Schreurs, Tobias Koyro, , Madeleine J. Bunders

GOAT is a deep learning tool for annotating organoids from microscopy images, showing high performance across diverse organoid systems.

bioRxiv · Sep 6, 2022 · PreprintBioinformatics