Author

Duo Du

Fudan University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Organism:human· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Bosen LiiD· 1 shared Dandan ZhangiD· 1 shared Fan ZhongiD· 1 shared Haozhe YuaniD· 1 shared Houbao LiuiD· 1 shared Jiakang MaiD· 1 shared Jue WangiD· 1 shared Lei LiuiD· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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1 shared paperGenomics

Bosen LiORCID

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3 papers

Recent·Most cited

Enhancing Recognition and Interpretation of Functional Phenotypic Sequences through Fine-Tuning Pre-Trained Genomic Models

Duo Du, Fan Zhong, Lei Liu

This paper fine-tunes pre-trained genomic models on genotype-phenotype datasets to improve DNA sequence classification, achieving high accuracy on the HERV dataset.

bioRxiv · Dec 5, 2023 · PreprintBioinformatics

CRISPR-based targeted haplotype-resolved assemblies of a megabase region

Taotao Li, Duo Du, Dandan Zhang, Yicheng Lin, Jiakang Ma, Mengyu Zhou, Weida Meng, Zelin Jin, Ziqiang Chen, Haozhe Yuan, Jue Wang, Shulong Dong, Shaoyang Sun, Wenjing Ye, Bosen Li, , Yun Liu

This paper demonstrates a CRISPR-based method to construct haplotype-resolved assemblies of targeted genomic regions, achieving comparable accuracy with reduced cost and complexity.

Nature Communications · Jan 3, 2023Peer-reviewedGenomics

Building a sequence map of the pig pan-genome from multiple de novo assemblies and Hi-C data

Xiaomeng Tian, Ran Li, Weiwei Fu, Yán Li, Xihong Wang, Ming Li, Duo Du, Qianzi Tang, Yudong Cai, Yiming Long, Yue Zhao, Mingzhou Li, Yu Jiang

The paper constructs a pig pan-genome using multiple de novo assemblies and Hi-C data, identifying novel sequences and improving SNP calling for genetic diversity analysis.

Science China Life Sciences · Jul 8, 2019Peer-reviewedGenomics