Yu Jiang

This paper presents a telomere-to-telomere genome of Holstein cattle, identifies genetic loci associated with telomere length, and highlights key biological processes involved.

This study identifies a missense mutation in FBXL3 linked to seasonal breeding in sheep, showing it affects circadian rhythms and estrus patterns.

This study constructs a cross-species single-cell transcriptomic atlas of placentas across ten mammalian species, revealing trophoblast lineage dynamics and gene regulatory networks linked to placental evolution and disease.

The paper presents the first chromosome-level genome assembly for Sichuan taimen, revealing high tandem repeat proportions and population shrinkage.

This study identifies three genomic regions and 12 candidate genes associated with age at first service in Chinese Holstein heifers using GWAS and colocalization analysis, highlighting ANAPC4 as a putative causal gene.

The paper constructs a cattle cell-type-specific regulatory variant atlas by integrating bulk and single-cell RNA-seq data, identifying eQTL and linking them to GWAS loci for breeding insights.

GP-ML-DC improves genome prediction by combining machine learning and deep learning with a two-phase dimensionality reduction approach, outperforming existing methods on cattle milk traits.

The paper sequenced clonal Fuji apple varieties to uncover somatic variants linked to spur-type morphology and early maturation traits.

The paper constructs a graph-based sheep pan-genome to identify structural variations and their association with tail phenotypes in domestic and wild sheep.

The paper presents chromosome-level genomes of Morus species, identifying the genetic basis of sex determination and karyotype evolution in dioecious Morus notabilis.

The paper sequences ancient genomes of Sussemionus, re-dating its extinction to the late Holocene and revealing genetic divergence and admixture events in the Equus lineage.

The paper identifies ruminant-specific conserved non-coding elements and develops a method to interpret their regulatory roles in rumen development using gene regulatory networks.

This study constructs a chicken pan-genome from 20 de novo assemblies, identifying novel genes predominantly in sub-telomeric regions that are undetectable by DNA sequencing but present in transcriptomes.

This study presents a nearly complete duck genome assembly, revealing conserved and convergent chromosome architectures between birds and mammals, including TAD organization and W chromosome evolution.

This study identifies introgression and selection events in goat domestication, linking them to immune and behavioral genes.

The paper introduces BGVD, a database for bovine genomic variations and selection signatures, enabling data retrieval and visualization for cattle genomics research.

The paper constructs a pig pan-genome using multiple de novo assemblies and Hi-C data, identifying novel sequences and improving SNP calling for genetic diversity analysis.

Pisces is a variant caller for NGS data that improves accuracy for somatic and germline variants through specialized modules.

This study uses base editing in goat embryos to introduce nonsense mutations in FGF5, improving cashmere yield with minimal off-target effects.