Author

E. C. Fogarty

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

A. M. Eren· 3 shared A. D. Willis· 2 shared I. Veseli· 2 shared M. K. Yu· 2 shared M. S. Schechter· 2 shared A. D. Lemenze· 1 shared A. Fernandez-Guerra· 1 shared A. J. Pinto· 1 shared

Activity by Year

2022-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersMicrobiology

A. M. Eren

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Author profile →

4 papers

Recent·Most cited

Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

I. Veseli, Y. T. Chen, M. S. Schechter, C. Vanni, E. C. Fogarty, A. R. Watson, B. A. Jabri, R. Blekhman, A. D. Willis, M. K. Yu, A. Fernandez-Guerra, J. Fussel, A. M. Eren

The paper identifies high metabolic independence as a marker of gut microbiome changes in IBD, using a software framework to analyze metagenomic data from healthy and IBD patients.

bioRxiv · May 10, 2023Microbiology

A highly conserved and globally prevalent cryptic plasmid is among the most numerous mobile genetic elements in the human gut

E. C. Fogarty, M. S. Schechter, K. Lolans, M. L. Sheahan, I. Veseli, R. Moore, E. Kiefl, T. Moody, P. A. Rice, M. K. Yu, M. Mimee, E. B. Chang, S. L. McLellan, A. D. Willis, L. E. Comstock, A. M. Eren

The paper identifies a highly prevalent cryptic plasmid in the human gut that is more numerous than crAssphage and has potential applications in detecting fecal contamination and inflammatory states.

bioRxiv · Mar 25, 2023 · PreprintMicrobiology

A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome

P. Chitale, A. D. Lemenze, E. C. Fogarty, A. Shah, C. A. Grady, A. R. Odom-Mabey, W. E. Johnson, J. H. Yang, A. M. Eren, R. Brosch, P. Kumar, D. Alland

The paper updates the M. tuberculosis H37Rv reference genome using Bact-Builder, revealing 6.4 kb of new sequence and ten new regions in widely used strains.

bioRxiv · Jul 15, 2022Microbiology

Low diversity and microdiversity of comammox bacteria in wastewater systems suggests wastewater-specific adaptation within the Ca. Nitrospira nitrosa cluster.

I. Cotto, K. J. Vilardi, L. Huo, E. C. Fogarty, W. Khunjar, C. Wilson, H. De Clippeleir, K. Gilmore, E. Bailey, S. J. Lücker, A. J. Pinto

The paper compares diversity and microdiversity of comammox bacteria with strict nitrifiers in wastewater systems, finding low diversity and specific adaptations in comammox populations.

bioRxiv · Jun 11, 2022Microbiology