Author

M. K. Yu

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 3

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Assay:metagenomics· 3 Research Focus:cell type annotation· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

A. M. Eren· 3 shared I. Veseli· 3 shared A. D. Willis· 2 shared A. R. Watson· 2 shared E. C. Fogarty· 2 shared K. Lolans· 2 shared M. S. Schechter· 2 shared A. Fernandez-Guerra· 1 shared

Activity by Year

2021-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersMicrobiology

A. M. Eren

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

I. Veseli, Y. T. Chen, M. S. Schechter, C. Vanni, E. C. Fogarty, A. R. Watson, B. A. Jabri, R. Blekhman, A. D. Willis, M. K. Yu, A. Fernandez-Guerra, J. Fussel, A. M. Eren

The paper identifies high metabolic independence as a marker of gut microbiome changes in IBD, using a software framework to analyze metagenomic data from healthy and IBD patients.

bioRxiv · May 10, 2023Microbiology

A highly conserved and globally prevalent cryptic plasmid is among the most numerous mobile genetic elements in the human gut

E. C. Fogarty, M. S. Schechter, K. Lolans, M. L. Sheahan, I. Veseli, R. Moore, E. Kiefl, T. Moody, P. A. Rice, M. K. Yu, M. Mimee, E. B. Chang, S. L. McLellan, A. D. Willis, L. E. Comstock, A. M. Eren

The paper identifies a highly prevalent cryptic plasmid in the human gut that is more numerous than crAssphage and has potential applications in detecting fecal contamination and inflammatory states.

bioRxiv · Mar 25, 2023 · PreprintMicrobiology

Metabolic independence drives gut microbialcolonization and resilience in health and disease

A. R. Watson, J. Fuessel, I. Veseli, J. Z. DeLongchamp, M. Silva, F. Trigodet, K. Lolans, A. Shaiber, E. Fogarty, J. M. Runde, C. Quince, M. K. Yu, A. Soylev, H. G. Morrison, S. T. M. Lee, , A. M. Eren

This study investigates how metabolic independence influences gut microbial colonization and resilience in health and disease using fecal microbiota transplantation.

bioRxiv · Mar 2, 2021Microbiology