Author

Emmanuel Barillot

Primary ORCID profile (0000-0003-2724-2002 · 31 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Emmanuel BarillotiD31 papers · Inserm

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Paul Deveau· 2 shared Valentina Boeva· 2 shared Andrei Zinovyev· 1 shared Angela BelliniiD· 1 shared Anne BolandiD· 1 shared Derek Oldridge· 1 shared Eric Bonnet· 1 shared Eve Lapouble· 1 shared

Activity by Year

2016-2016 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Paul Deveau

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2 papers

Recent·Most cited

Calculating biological module enrichment or depletion and visualizing data on large-scale molecular maps with ACSNMineR and RNaviCell R packages

Paul Deveau, Emmanuel Barillot, Valentina Boeva, Andrei Zinovyev, Eric Bonnet

The paper introduces two R packages, ACSNMineR and RNaviCell, for pathway enrichment analysis and visualization of biological data on molecular maps.

bioRxiv · Jul 22, 2016 · PreprintBioinformatics

Clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction

Paul Deveau, Leo Colmet Daage, Derek Oldridge, Virginie Bernard, Angela Bellini, Mathieu Chicard, Nathalie Clement, Eve Lapouble, Valérie Combaret, Anne Boland, Vincent Meyer, Jean-François Deleuze, Isabelle Janoueix-Lerosey, Emmanuel Barillot, Olivier Delattre, , Valentina Boeva

The paper introduces QuantumClone, a method for clonal reconstruction in cancer that accounts for variant allele frequencies and genotypes, and applies it to neuroblastoma samples to identify recurrently altered pathways in different clonal populations.

bioRxiv · May 19, 2016Cancer Biology