Author

Valentina Boeva

Primary ORCID profile (0000-0002-4382-7185 · 25 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Valentina BoevaiD25 papers · SIB Swiss Institute of Bioinformatics

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:database / resource· 2 Research Focus:software / tool· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

Emmanuel Barillot· 2 shared Paul Deveau· 2 shared Adam Novak· 1 shared Ali GhaffaariiD· 1 shared Andrei Zinovyev· 1 shared Angela BelliniiD· 1 shared Anne BolandiD· 1 shared Bas E Dutilh· 1 shared

Activity by Year

2016-2016 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersBioinformatics

Emmanuel Barillot

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Author profile →

3 papers

Recent·Most cited

Computational Pan-Genomics: Status, Promises and Challenges

Tobias Marschall, Manja Marz, Thomas Abeel, Louis Dijkstra, Bas E Dutilh, Ali Ghaffaari, Paul Kersey, Wigard Kloosterman, Veli Makinen, Adam Novak, Benedict Paten, David Porubsky, Eric RIVALS, Can Alkan, Jasmijn Baaijens, , Pisan

This paper reviews computational pan-genomics, discussing its status, potential, and challenges across multiple biological disciplines.

Briefings in Bioinformatics · Oct 21, 2016Peer-reviewedGenomics

Calculating biological module enrichment or depletion and visualizing data on large-scale molecular maps with ACSNMineR and RNaviCell R packages

Paul Deveau, Emmanuel Barillot, Valentina Boeva, Andrei Zinovyev, Eric Bonnet

The paper introduces two R packages, ACSNMineR and RNaviCell, for pathway enrichment analysis and visualization of biological data on molecular maps.

bioRxiv · Jul 22, 2016 · PreprintBioinformatics

Clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction

Paul Deveau, Leo Colmet Daage, Derek Oldridge, Virginie Bernard, Angela Bellini, Mathieu Chicard, Nathalie Clement, Eve Lapouble, Valérie Combaret, Anne Boland, Vincent Meyer, Jean-François Deleuze, Isabelle Janoueix-Lerosey, Emmanuel Barillot, Olivier Delattre, , Valentina Boeva

The paper introduces QuantumClone, a method for clonal reconstruction in cancer that accounts for variant allele frequencies and genotypes, and applies it to neuroblastoma samples to identify recurrently altered pathways in different clonal populations.

bioRxiv · May 19, 2016Cancer Biology