Author

F. Alnaji

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:whole-genome sequencing· 2 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Organism:plant (other)· 1 Research Focus:variant calling· 1

Frequent Co-Authors

A. Marti· 1 shared A. Nater· 1 shared A. Pekosz· 1 shared A. Summerfield· 1 shared C. B. Brooke· 1 shared C. H. Luo· 1 shared C. J. Fields· 1 shared D. D. McManus· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperMicrobiology

A. Marti

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Fitness adaptations of Japanese encephalitis virus in pigs following vector-free serial passaging

A. Marti, A. Nater, J. Pego Magalhaes, L. Almeida, M. Lewandowska, M. Liniger, N. Ruggli, L. Grau-Roma, F. Alnaji, M. Vignuzzi, O. Garcia-Nicolas, A. Summerfield

This study shows that serial passaging of JEV in pigs leads to fitness adaptations and amino acid changes, but not increased direct transmission.

bioRxiv · Feb 20, 2024Microbiology

Within-host evolutionary dynamics and tissue compartmentalization during acute SARS-CoV-2 infection

M. Farjo, K. Koelle, M. A. Martin, L. L. Gibson, K. K. Walden, G. Rendon, C. J. Fields, F. Alnaji, N. Gallagher, C. H. Luo, H. H. Mostafa, Y. C. Manabe, A. Pekosz, R. L. Smith, D. D. McManus, C. B. Brooke

This study uses daily saliva and nasal samples to track SARS-CoV-2 genetic variants in infected individuals, revealing stochastic evolution, mutational hotspots, and compartmentalization between sample sites.

bioRxiv · Jun 21, 2022Microbiology