Author

F. Inoue

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Evolutionary Biology· 3 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 4 Research Focus:chromatin & epigenetic regulation· 3 Research Focus:cell type annotation· 2 Organism:chicken / avian· 2 Assay:ChIP-seq· 2 Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2 Approach:deep learning· 1

Frequent Co-Authors

H. Ryu· 2 shared K. S. Pollard· 2 shared N. Ahituv· 2 shared S. Whalen· 2 shared T. Fair· 2 shared A. A. Pollen· 1 shared A. Kriegstein· 1 shared A. Pollen· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersEvolutionary Biology

H. Ryu

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Detailed microbiome analysis of sticker-stripped surface materials of acne lesions revealed acne-related Cutibacterium acnes subtypes: A pilot study

Y. Shimokawa, O. Funatsu, K. Ohata, F. Inoue, K. Tachibana, I. Dekio

This study analyzes the skin microbiome of Japanese women using self-collected samples to identify C. acnes subtypes associated with acne vulgaris.

bioRxiv · Dec 19, 2023 · PreprintMicrobiology

Three-dimensional genome re-wiring in loci with Human Accelerated Regions

K. C. Keough, S. Whalen, F. Inoue, P. F. Przytycki, T. Fair, C. Deng, M. Steyert, H. Ryu, K. Lindblad-Toh, E. Karlsson, Zoonomia Consortium, T. J. Nowakowski, N. J. Ahituv, A. A. Pollen, K. S. Pollard

The paper identifies human-specific 3D genome re-wiring in conserved loci, linking accelerated evolution to regulatory rewiring in neural progenitor cells.

bioRxiv · Oct 4, 2022Evolutionary Biology

Machine-learning dissection of Human Accelerated Regions in primate neurodevelopment

S. Whalen, F. Inoue, H. Ryu, T. Fair, E. Markenscoff-Papadimitriou, K. Keough, M. Kircher, B. Martin, B. Alvarado, O. Elor, D. L. Cintron, A. Williams, M. A. H. Samee, S. Thomas, R. Krencik, , K. S. Pollard

The paper uses machine learning to analyze human-chimpanzee variants in HARs, finding 43% affect chromatin state and 14% affect neurodevelopmental enhancer activity, with species-specific activity predicted by transcription factor footprints.

bioRxiv · Sep 28, 2022Evolutionary Biology

The cis-regulatory effects of modern human-specific variants

C. V. Weiss, L. Harshman, F. Inoue, H. B. Fraser, D. A. Petrov, N. Ahituv, D. Gokhman

The paper investigates the regulatory effects of modern human-specific variants using a massively parallel reporter assay in three cell types, finding 1,791 active sequences and 407 driving differential expression.

bioRxiv · Oct 7, 2020Evolutionary Biology