Author

George Stephenson

University of Colorado Boulder

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Alison R. S. PashosiD· 1 shared Aneesh Waikar· 1 shared Conor McMahon· 1 shared Isabela Tiemy PereiraiD· 1 shared Izabela MamedeiD· 1 shared John L. RinniD· 1 shared Mingfeng LiuiD· 1 shared Sajad SofiiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperGenomics

Alison R. S. PashosORCID

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2 papers

Recent·Most cited

MISO: A Controlled Ablation of Masking, Initialization, Sampling, and Optimization for Segmentation in Volumetric Electron Microscopy

Shanmukha Vamshi Kuruba, George Stephenson, Vignesh Kasinath

The paper evaluates sampling, loss functions, and masking strategies for vEM organelle segmentation, finding that these factors significantly impact performance, especially for rare classes.

bioRxiv · Jun 22, 2026 · PreprintCell Biology

Temporal Transcriptomics Identifies Isoform-specific Trans-regulation by Multiple lncRNAs in Human iPSCs

Mingfeng Liu, Izabela Mamede, Sajad Sofi, Isabela Tiemy Pereira, Vishantie Dostal, Alison R. S. Pashos, Conor McMahon, Aneesh Waikar, George Stephenson, Thomas R. Cech, John L. Rinn

The paper identifies six lncRNAs that regulate gene expression in trans in human iPSCs, revealing isoform-specific effects and a systemic response to doxycycline exposure.

bioRxiv · May 14, 2026 · PreprintGenomics