Author

Alison R. S. Pashos

University of Colorado BoulderORCID 0000-0001-7072-5603Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Approach:experimental assay· 1 Approach:statistical model· 1

Frequent Co-Authors

John L. RinniD· 2 shared Aneesh Waikar· 1 shared Arpan DasiD· 1 shared Benjamin NebenfuehriD· 1 shared Conor McMahon· 1 shared Dan Timmons· 1 shared Daniel Ahrens· 1 shared Devin TauberiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersGenomics

John L. RinnORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintMay 14, 2026

Temporal Transcriptomics Identifies Isoform-specific Trans-regulation by Multiple lncRNAs in Human iPSCs

Mingfeng Liu, Izabela Mamede, Sajad Sofi…·John L. Rinn

The paper identifies six lncRNAs that regulate gene expression in trans in human iPSCs, revealing isoform-specific effects and a systemic response to doxycycline exposure.

1 citation

humanbulk RNA-seq

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GenomicsPLoS ONEPeer-reviewedJun 24, 2021

Genome-wide binding analysis of 195 DNA Binding Proteins reveals "reservoir" promoters and human specific SVA-repeat family regulation

Soraya I. Shehata, Savannah Spradlin, Alison R. S. Pashos…·John L. Rinn

The paper re-analyzes ENCODE data to identify reservoir promoters and human-specific SVA-repeat regulation using reproducible methods.

4 citations

humanChIP-seq

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