Author

Gergana Bounova

The Netherlands Cancer Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 2 Research Focus:drug response / drug discovery· 2 Organism:human· 2 Approach:benchmark study· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Evert BosdriesziD· 2 shared Nanne Aben· 2 shared Albert A. AntolíniD· 1 shared Alberto CalderoneiD· 1 shared Alicia AmadoziD· 1 shared Amin AllamiD· 1 shared Amir B. K. ForoushaniiD· 1 shared Anastasios DrosouiD· 1 shared

Activity by Year

2018-2019 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Evert BosdrieszORCID

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2 papers

Recent·Most cited

A cancer pharmacogenomic screen powering crowd-sourced advancement of drug combination prediction

Michael P. Menden, Dennis Y.Q. Wang, Mike J. Mason, Bence Szalai, Krishna C. Bulusu, Yuanfang Guan, Thomas Von Yu, Jaewoo Kang, Minji Jeon, Russell D. Wolfinger, Tin Nguyen, Mikhail Zaslavskiy, Jordi Abante, Bárbara Schmitz‐Abecassis, Nanne Aben, , Denis Fourches

The paper presents a large-scale cancer pharmacogenomic screen with 11,576 experiments on 910 drug combinations across 85 cancer cell lines, enabling crowd-sourced prediction of synergistic drug pairs and biomarkers.

Nature Communications · Jun 17, 2019Peer-reviewedBioinformatics

Identifying biomarkers of anti-cancer drug synergy using multi-task learning

Nanne Aben, Julian R. de Ruiter, Evert Bosdriesz, Yongsoo Kim, Gergana Bounova, Daniël J. Vis, Lodewyk F.A. Wessels, Magali Michaut

The paper uses multi-task learning to identify biomarkers of anti-cancer drug synergy using low-sample-size drug combination data from 85 cell lines and 167 drug combinations.

bioRxiv · Aug 23, 2018 · PreprintBioinformatics