Author

J. Zivanov

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 5 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:cryo-EM· 5 Research Focus:protein structure prediction· 5 Approach:Bayesian inference· 2 Approach:deep learning· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:electronic health records· 1 Approach:experimental assay· 1

Frequent Co-Authors

S. Scheres· 4 shared T. Nakane· 4 shared D. Kimanius· 2 shared E. Pyle· 2 shared J. Oton· 2 shared K. Qu· 2 shared S. H. W. Scheres· 2 shared Z. Ke· 2 shared

Activity by Year

2018-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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4 shared papersBiophysics

S. Scheres

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Author profile →

6 papers

Recent·Most cited

An image processing pipeline for electron cryo-tomography in RELION-5

A. Burt, B. Toader, R. Warshamanage, A. von Kugelgen, E. Pyle, J. Zivanov, D. Kimanius, T. A. M. Bharat, S. Scheres

The paper introduces an image processing pipeline for electron cryo-tomography in RELION-5, enabling automated atomic model building from tomographic data.

bioRxiv · Apr 26, 2024Biophysics

A Bayesian approach to single-particle electron cryo-tomography in RELION-4.0

J. Zivanov, J. Oton, Z. Ke, A. von Kügelgen, E. Pyle, K. Qu, D. Morado, D. Castano-Diez, G. Zanetti, T. Bharat, J. Briggs, S. Scheres

The paper introduces a Bayesian method for improving cryo-ET data analysis in RELION-4.0, enabling higher-resolution structure determination from multiple particles.

bioRxiv · Feb 28, 2022Biophysics

Structures, conformations and distributions of SARS-CoV-2 spike protein trimers on intact virions

Z. Ke, J. Oton, K. Qu, M. Cortese, V. Zila, L. McKeane, T. Nakane, J. Zivanov, C. J. Neufeldt, J. M. Lu, J. Peukes, X. Xiong, H.-G. Krausslich, S. H. W. Scheres, R. Bartenschlager, J. A. G. Briggs

This study uses cryo-electron microscopy to determine the structure, conformational flexibility, and distribution of SARS-CoV-2 spike protein trimers on intact virions.

bioRxiv · Jun 27, 2020Microbiology

Estimation of high-order aberrations and anisotropic magnification from cryo-EM datasets in RELION-3.1

J. Zivanov, T. Nakane, S. Scheres

The paper introduces methods to estimate high-order aberrations and anisotropic magnification in cryo-EM data, improving 3D reconstruction resolution when applicable, and implements them in RELION-3.1.

IUCrJ · Feb 11, 2020Peer-reviewedBiophysics

RELION-3: new tools for automated high-resolution cryo-EM structure determination

J. Zivanov, T. Nakane, B. Forsberg, D. Kimanius, W. J. H. Hagen, E. Lindahl, S. H. W. Scheres

RELION-3 introduces new tools for automated high-resolution cryo-EM structure determination, improving resolution through enhanced processing methods and hardware flexibility.

bioRxiv · Sep 19, 2018Biophysics

A Bayesian approach to beam-induced motion correction in cryo-EM single-particle analysis

J. Zivanov, T. Nakane, S. Scheres

The paper introduces a Bayesian method for correcting beam-induced motion in cryo-EM single-particle analysis, showing improved performance over existing methods in RELION-3.

bioRxiv · Aug 3, 2018Biophysics