Author

K. Hopkins

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

D. Crook· 2 shared N. Stoesser· 2 shared S. Lipworth· 2 shared A. B. Jousset· 1 shared A. E. Sheppard· 1 shared A. P. A. Hendrickx· 1 shared A. PERRIN· 1 shared A. S. Walker· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersMicrobiology

D. Crook

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Author profile →

4 papers

Recent·Most cited

Evaluation of the accuracy of bacterial genome reconstruction with Oxford Nanopore R10.4.1 long-read-only sequencing

N. D. Sanderson, K. Hopkins, M. Colpus, M. Parker, S. Lipworth, D. Crook, N. Stoesser

This paper evaluates the accuracy of bacterial genome reconstruction using Oxford Nanopore R10.4.1 long-read-only sequencing and finds it produces accurate assemblies at 40x depth, competitive with hybrid Illumina-Nanopore assemblies.

Microbial Genomics · May 7, 2024Peer-reviewedMicrobiology

Comparative genomics of carbapenemase-producing Morganella spp.

R. A. Bonnin, E. Creton, A. PERRIN, D. Girlich, C. Emeraud, A. B. Jousset, M. Duque, K. Hopkins, P. Bogaerts, Y. Glupczynski, M. Gniadkowski, A. P. A. Hendrickx, K. Van Der Zwaluw, P. Apfalter, R. Hartl, , L. Dortet

This study characterizes a large collection of carbapenemase-producing Morganella isolates, revealing new species, intrinsic resistance mechanisms, and potential therapeutic options.

bioRxiv · Mar 30, 2023Microbiology

Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on Escherichia coli

T. J. Davies, J. Swann, A. E. Sheppard, H. Pickford, S. Lipworth, M. AbuOun, M. Ellington, P. W. Fowler, S. Hopkins, K. Hopkins, D. Crook, T. E. Peto, M. F. Anjum, A. S. Walker, N. Stoesser

This study evaluates four AMR gene typing methods using simulated and real E. coli data, revealing significant discrepancies and highlighting issues with current bioinformatic approaches.

bioRxiv · Nov 3, 2021 · PreprintMicrobiology

Transglutaminase-2 facilitates extracellular vesicle-mediated establishment of the metastatic niche

A. Shinde, J. S. Paez, S. M. Libring, K. Hopkins, L. Solorio, M. Wendt

This study identifies TGM2 as a key factor in metastatic niche formation via extracellular vesicles in breast cancer, showing its role in enhancing metastasis through fibronectin crosslinking.

bioRxiv · Dec 16, 2019Cancer Biology