Author

S. Lipworth

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:variant calling· 3 Organism:E. coli· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

N. Stoesser· 3 shared A. S. Walker· 2 shared D. Crook· 2 shared K. Hopkins· 2 shared T. E. Peto· 2 shared A. E. Sheppard· 1 shared A. J. Mathers· 1 shared A. Peniket· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersMicrobiology

N. Stoesser

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Author profile →

3 papers

Recent·Most cited

Evaluation of the accuracy of bacterial genome reconstruction with Oxford Nanopore R10.4.1 long-read-only sequencing

N. D. Sanderson, K. Hopkins, M. Colpus, M. Parker, S. Lipworth, D. Crook, N. Stoesser

This paper evaluates the accuracy of bacterial genome reconstruction using Oxford Nanopore R10.4.1 long-read-only sequencing and finds it produces accurate assemblies at 40x depth, competitive with hybrid Illumina-Nanopore assemblies.

Microbial Genomics · May 7, 2024Peer-reviewedMicrobiology

Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on Escherichia coli

T. J. Davies, J. Swann, A. E. Sheppard, H. Pickford, S. Lipworth, M. AbuOun, M. Ellington, P. W. Fowler, S. Hopkins, K. Hopkins, D. Crook, T. E. Peto, M. F. Anjum, A. S. Walker, N. Stoesser

This study evaluates four AMR gene typing methods using simulated and real E. coli data, revealing significant discrepancies and highlighting issues with current bioinformatic approaches.

bioRxiv · Nov 3, 2021 · PreprintMicrobiology

Multi-omic surveillance of Escherichia coli and Klebsiella spp. in hospital sink drains and patients

B. Constantinides, K. K. Chau, T. P. Quan, G. Rodger, M. Andersson, K. J. Jeffery, S. Lipworth, S. Gweon, A. Peniket, G. Pike, J. Millo, M. Byukusenge, M. Holdaway, C. Gibbons, A. J. Mathers, , N. Stoesser

The paper shows hospital sink drains are colonized by diverse E. coli and Klebsiella strains, including resistant ones, and may contribute to patient infections.

Microbial Genomics · Jul 1, 2020Peer-reviewedMicrobiology