Author

S. Hopkins

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 2 Physiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Organism:rat· 1 Research Focus:variant calling· 1

Frequent Co-Authors

A. S. Walker· 2 shared N. Stoesser· 2 shared A. E. Sheppard· 1 shared A. Gonzalez· 1 shared A. Roohi· 1 shared C. A. Lowry· 1 shared C. L. Foxx· 1 shared D. Crook· 1 shared

Activity by Year

2021-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMicrobiology

A. S. Walker

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

A workflow for the detection of antibiotic residues, measurement of water chemistry and preservation of hospital sink drain samples for metagenomic sequencing

G. Rodger, K. Chau, P. Aranega-Bou, A. Roohi, G. Moore, K. L. Hopkins, S. Hopkins, A. S. Walker, N. Stoesser

The paper validates a workflow for detecting antibiotic residues and measuring water chemistry in hospital sink samples, and confirms boric acid preserves microbial and resistome composition for metagenomic sequencing.

bioRxiv · Sep 22, 2023Microbiology

Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on Escherichia coli

T. J. Davies, J. Swann, A. E. Sheppard, H. Pickford, S. Lipworth, M. AbuOun, M. Ellington, P. W. Fowler, S. Hopkins, K. Hopkins, D. Crook, T. E. Peto, M. F. Anjum, A. S. Walker, N. Stoesser

This study evaluates four AMR gene typing methods using simulated and real E. coli data, revealing significant discrepancies and highlighting issues with current bioinformatic approaches.

bioRxiv · Nov 3, 2021 · PreprintMicrobiology

Probiotic bacteria and bile acid profile are modulated by prebiotic diet and associate with facilitated diurnal clock/sleep realignment after chronic disruption of rhythms

R. S. Thompson, M. K. Gaffney, S. Hopkins, T. Kelley, A. Gonzalez, S. J. Bowers, M. H. Vitaterna, F. W. Turek, C. L. Foxx, C. A. Lowry, F. Vargas, P. C. Dorrestein, K. P. Wright, R. Knight, M. Fleshner

This study shows that a prebiotic diet increases beneficial gut bacteria and bile acids, helping rats realign sleep and circadian rhythms after chronic disruption.

bioRxiv · Mar 3, 2021Physiology