Author

K. Phadke

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Research Focus:protein folding & dynamics· 1 Assay:protein structure· 1 Approach:statistical model· 1

Frequent Co-Authors

M. L. Reed· 2 shared C. B. Wadsworth· 1 shared C. J. Kornowicz· 1 shared C. J. Ryan· 1 shared D. C. Dimartino· 1 shared E. C. Holland· 1 shared E. P. Fokoue· 1 shared E. T. Everingham· 1 shared

Activity by Year

2023-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersMicrobiology

M. L. Reed

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Rolling the evolutionary dice: Neisseria commensals as proxies for elucidating the underpinnings of antibiotic resistance mechanisms and evolution in human pathogens

K. M. Frost, S. L. Charron-Smith, T. C. Cotsonas, D. C. Dimartino, R. C. Eisenhart, E. T. Everingham, E. C. Holland, K. Imtiaz, C. J. Kornowicz, L. E. Lenhard, L. H. Lynch, N. P. Moore, K. Phadke, M. L. Reed, S. R. Smith, , C. B. Wadsworth

This study uses in vitro evolution of commensal Neisseria species to investigate resistance evolution to azithromycin and penicillin, finding convergent mutations in key resistance mechanisms.

bioRxiv · Sep 26, 2023 · PreprintMicrobiology

ATOMDANCE: kernel-based denoising and allosteric resonance analysis for functional and evolutionary comparisons of protein dynamics

G. A. Babbitt, M. Rajendran, M. L. Lynch, R. Asare-Bediako, L. T. Mouli, C. J. Ryan, H. Srivastava, P. Rynkiewicz, K. Phadke, M. L. Reed, N. Moore, M. C. Ferran, E. P. Fokoue

ATOMDANCE compares and denoises protein motion dynamics between functional or evolutionary states using kernel-based methods to identify key sites and functional shifts.

bioRxiv · Apr 20, 2023Biophysics