Author

K. Vakili

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Organism:human· 2 Research Focus:cancer & tumor microenvironment· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:genetic perturbation / CRISPR· 1

Frequent Co-Authors

P. Sethupathy· 2 shared R. K. Ma· 2 shared A. Emili· 1 shared A. J. Shumway· 1 shared A. Karki· 1 shared A. R. Farghli· 1 shared D. E. Bauer· 1 shared E. A. Bordt· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersCancer Biology

P. Sethupathy

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2 papers

Recent·Most cited

DNAJB1-PRKACA fusion protein-regulated LINC00473 promotes tumor growth and alters mitochondrial fitness in fibrolamellar carcinoma

R. K. Ma, P.-Y. Tsai, A. R. Farghli, A. J. Shumway, M. Kanke, J. D. Gordan, T. Gujral, K. Vakili, M. Nukaya, L. Noetzli, S. Ronnekleiv-Kelly, W. Broom, J. Barrow, P. Sethupathy

This paper identifies LINC00473 as a downstream mediator of DNAJB1-PRKACA fusion in fibrolamellar carcinoma, showing it promotes tumor growth and alters mitochondrial function.

bioRxiv · Jun 2, 2023Cancer Biology

DNAJB1-PRKACA in HEK293T cells induces LINC00473 overexpression that depends on PKA signaling

S. S. Kim, I. Kycia, M. Karski, R. K. Ma, E. A. Bordt, J. Kwan, A. Karki, E. Winter, R. G. Aktas, Y. Wu, A. Emili, D. E. Bauer, P. Sethupathy, K. Vakili

The paper engineers a DNAJB1-PRKACA fusion in HEK293T cells to study its oncogenic effects, finding LINC00473 overexpression dependent on PKA signaling.

bioRxiv · Aug 11, 2021Cancer Biology