Author

Kaivan Kamali

Pennsylvania State University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:human· 3 Assay:whole-genome sequencing· 3 Research Focus:database / resource· 2 Organism:mouse· 2 Organism:rat· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Barbara C. McGrath· 3 shared Kateryna D. MakovaiD· 3 shared Alexander P. SweeteniD· 2 shared Alexandra P. LewisiD· 2 shared Arang RhieiD· 2 shared Arjun BiddandaiD· 2 shared Brandon D. PickettiD· 2 shared Diana E. Haddad· 2 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Barbara C. McGrath

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Author profile →

4 papers

Recent·Most cited

Complete sequencing of ape genomes

DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar, Dmitry Antipov, Brandon D. Pickett, Yana Safonova, Francesco Montinaro, Yanting Luo, Joanna Malukiewicz, Jessica M. Storer, Jiadong Lin, Abigail N Sequeira, , Zhenmiao Zhang

The paper presents haplotype-resolved genomes of six ape species with high accuracy and provides comparative analyses to study evolutionary diversity and gene family evolution.

Nature · Apr 9, 2025Peer-reviewedGenomics

Non-canonical DNA in human and other ape telomere-to-telomere genomes

Linnéa Smeds, Kaivan Kamali, Iva Kejnovská, Eduard Kejnovský, Francesca Chiaromonte, Kateryna D. Makova

The paper characterizes non-B DNA motifs in T2T genomes of apes, showing their enrichment in specific genomic regions and potential roles in genome function.

Nucleic Acids Research · Apr 7, 2025Peer-reviewedGenomics

The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes

Kateryna D. Makova, Brandon D. Pickett, Robert S. Harris, Gabrielle A. Hartley, Monika Čechová, Karol Pál, Sergey Nurk, DongAhn Yoo, Qiuhui Li, Prajna Hebbar, Barbara C. McGrath, Francesca Antonacci, Margaux Aubel, Arjun Biddanda, Matthew Borchers, , Adam M. Phillippy

The paper produces gapless assemblies of ape sex chromosomes for five great apes and a lesser ape, revealing divergence in Y chromosomes and evolutionary dynamics.

Nature · May 29, 2024Peer-reviewedGenomics

In vivo detection of DNA secondary structures using Permanganate/S1 Footprinting with Direct Adapter Ligation and Sequencing (PDAL-Seq)

Angelika Lahnsteiner, Sarah J. C. Craig, Kaivan Kamali, Bernadette Weissensteiner, Barbara C. McGrath, Angela Risch, Kateryna D. Makova

The paper introduces PDAL-Seq, a method to detect DNA secondary structures in vivo, and provides a standardized analysis pipeline.

bioRxiv · Nov 28, 2023 · PreprintMolecular Biology