Author
Pennsylvania State UniversityORCID 0000-0002-8415-9259Unclaimed ORCID profile · follow to get notified of new preprints
6 papers
Recent·Most cited
Giulio Formenti, Nivesh Jain, Jack A Medico, Marco Sollitto, Dmitry Antipov, Suziane Alves Barcellos, Matthew T. Biegler, Ines Borges, Jong-How Chang, Ying Chen, Haoyu Cheng, Helena B. Conceição, Matthew H. Davenport, Zhongwang Li, Erick Duarte, , Erich David Jarvis
This paper presents the first fully phased, diploid, telomere-to-telomere genome of the zebra finch, revealing new genes and structural features.
Cell · Aug 1, 2026Peer-reviewedGenomics
Saswat K. Mohanty, Maximillian G. Marin, Linnéa Smeds, Francesca Chiaromonte, Christian D. Huber, Kateryna D. Makova
The paper analyzes G-quadruplexes across the human pangenome, finding that they show distinct selection patterns and influence gene expression.
bioRxiv · Jun 23, 2026 · PreprintGenomics
Jacob P. Sieg, Huiqing Zeng, Hana Pálová, Linnéa Smeds, Saswat K. Mohanty, Angelika Lahnsteiner, Francesca Chiaromonte, Kateryna D. Makova
The paper analyzes single-stranded DNA (ssDNA) formation in human and non-human ape telomere-to-telomere genomes to identify non-B DNA structures and their functional roles.
bioRxiv · Nov 3, 2025 · PreprintGenomics
Linnéa Smeds, Jacob P Sieg, Simona Secomandi, Chul Lee, Marco Sollitto, Jack A Medico, Francesca Chiaromonte, Erich David Jarvis, Giulio Formenti, Kateryna D. Makova
The paper analyzes non-B DNA motifs in bird genomes, showing differences in distribution across chromosome types and their potential regulatory roles, while highlighting sequencing challenges.
bioRxiv · Oct 17, 2025 · PreprintGenomics
DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar, Dmitry Antipov, Brandon D. Pickett, Yana Safonova, Francesco Montinaro, Yanting Luo, Joanna Malukiewicz, Jessica M. Storer, Jiadong Lin, Abigail N Sequeira, , Zhenmiao Zhang
The paper presents haplotype-resolved genomes of six ape species with high accuracy and provides comparative analyses to study evolutionary diversity and gene family evolution.
Nature · Apr 9, 2025Peer-reviewedGenomics
Linnéa Smeds, Kaivan Kamali, Iva Kejnovská, Eduard Kejnovský, Francesca Chiaromonte, Kateryna D. Makova
The paper characterizes non-B DNA motifs in T2T genomes of apes, showing their enrichment in specific genomic regions and potential roles in genome function.
Nucleic Acids Research · Apr 7, 2025Peer-reviewedGenomics