Author

Koen Nijbroek

KeyGene (Netherlands)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:whole-genome sequencing· 3 Research Focus:genome assembly· 2 Organism:fungi (other)· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Research Focus:phylogenetics / evolution· 1 Organism:plant (other)· 1

Frequent Co-Authors

Alexander H. J. WittenbergiD· 3 shared Harrie Schneiders· 3 shared A. DrenthiD· 1 shared Adam M. PhillippyiD· 1 shared Alice FeurteyiD· 1 shared Andrea GuarracinoiD· 1 shared Andreas PeiliD· 1 shared Anker P. Sørensen· 1 shared

Activity by Year

2023-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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3 shared papersGenomics

Alexander H. J. WittenbergORCID

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3 papers

Recent·Most cited

Gapless assembly of complete human and plant chromosomes using only nanopore sequencing

Sergey Koren, Zhigui Bao, Andrea Guarracino, Shujun Ou, Sara Goodwin, Katharine M. Jenike, Julian Lucas, Brandy McNulty, Jimin Park, Mikko Rautiainen, Arang Rhie, Dick Roelofs, Harrie Schneiders, Ilse Vrijenhoek, Koen Nijbroek, , Adam M. Phillippy

This paper demonstrates that ONT Duplex sequencing combined with Pore-C data can assemble complete, high-quality human and plant chromosomes with base accuracy over 99.999%.

Genome Research · Nov 1, 2024Peer-reviewedBioinformatics

Segmental Duplications Drive the Evolution of Accessory Regions in a Major Crop Pathogen

Anouk C. van Westerhoven, Carolina Aguilera-Gálvez, Giuliana Nakasato‐Tagami, Xiaoqian Shi‐Kunne, Einar Martínez de la Parte, Edgar A. Chavarro‐Carrero, H.J.G. Meijer, Alice Feurtey, Nani Maryani, Nadia Ordonez, Harrie Schneiders, Koen Nijbroek, Alexander H. J. Wittenberg, R. Hofstede, Fernando A. García-Bastidas, , Michael Seidl

This study shows that segmental duplications drive the evolution of accessory regions in Fusarium oxysporum, contributing to virulence evolution in banana pathogens.

New Phytologist · Feb 25, 2024Peer-reviewedGenomics

The structure of the tetraploid sour cherry 'Schattenmorelle' (Prunus cerasus L.) genome reveals insights into its segmental allopolyploid nature

Thomas Wöhner, Ofere Francis Emeriewen, Alexander H. J. Wittenberg, Koen Nijbroek, Rui Peng Wang, Evert-Jan Blom, Harrie Schneiders, Jens Keilwagen, Thomas Berner, Katharina J. Hoff, Lars Gabriel, Hannah Thierfeldt, Omar Almolla, Lorenzo Barchi, Mirko Schuster, , Henryk Flachowsky

The paper sequences and analyzes the genome of the sour cherry cultivar Schattenmorelle to reveal its segmental allopolyploid structure and evolutionary history.

Frontiers in Plant Science · Dec 1, 2023Peer-reviewedGenomics