Author

Lauren Hansen

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Approach:deep learning· 2 Research Focus:differential expression· 2 Organism:human· 2 Assay:metabolomics· 2 Assay:metagenomics· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Rob D. KnightiD· 3 shared Andrés Mauricio Caraballo‐RodrígueziD· 2 shared Helena M. TubbiD· 2 shared Ipsita MohantyiD· 2 shared Madison AmbreiD· 2 shared Mingxun WangiD· 2 shared Pieter C. DorresteiniD· 2 shared Rima F Kaddurah-DaoukiD· 2 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersMicrobiology

Rob D. KnightORCID

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Author profile →

3 papers

Recent·Most cited

Genome-resolved ecology and evolution of the microbiome enabled by quantitative long-read metagenomics

M. Omar Din, Caitriona Brennan, Jianshu Zhao, Renee E. Oles, Lucas Patel, Amanda Birmingham, Dilara M. Sevilir, Lauren Hansen, Gillian M. Wright, Madison Ambre, Meika Tomita, Tara Boyer, Antonio Gonzalez, Gail L. Ackermann, Daniel McDonald, , Rob D. Knight

This paper introduces LRQ, a long-read metagenomics method that enables absolute strain abundance measurement and resolves microbial evolution in a Crohn's disease patient over eight years.

bioRxiv · Sep 29, 2026 · PreprintMicrobiology

A Multi-Organ Murine Metabolomics Atlas Reveals Molecular Dysregulations in Alzheimer's Disease

Simone Zuffa, Celeste Allaband, Vincent Charron‐Lamoureux, Andrés Mauricio Caraballo‐Rodríguez, Abubaker Patan, Ipsita Mohanty, Julius Agongo, John W. Bostick, T. Jaymie Connerly, Taren Thron, Brittany Needam, Matheus de Castro Fonseca, Rodolfo A. Salido, Lauren Hansen, Helena M. Tubb, , Sarkis K. Mazmanian

The paper presents a multi-organ metabolomics atlas in AD mouse models, identifying dysregulated metabolites and microbiome associations linked to oxidative stress and cognitive impairment.

bioRxiv · Apr 28, 2025 · PreprintMicrobiology

Empirically establishing drug exposure records directly from untargeted metabolomics data

Haoqi Nina Zhao, Kine Eide Kvitne, Corinna Brungs, Siddharth Mohan, Vincent Charron‐Lamoureux, Wout Bittremieux, Runbang Tang, Robin Schmid, Santosh Lamichhane, Yasin El Abiead, Mohammad Sobhan Sheikh Andalibi, Helena Mannochio-Russo, Madison Ambre, Nicole E. Avalon, MacKenzie Bryant, , Pieter C. Dorrestein

The paper develops a drug exposure resource from untargeted metabolomics data to identify medications without clinical records.

bioRxiv · Oct 7, 2024 · PreprintBioinformatics