Author

Liam Shanley

Cold Spring Harbor Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Ali ShilatifardiD· 1 shared Amanda LuvisottoiD· 1 shared Arvind RishiiD· 1 shared Christopher R. VakociD· 1 shared Craig Podszus· 1 shared Dan LevyiD· 1 shared Daniel Bradford· 1 shared Danielle Stauder· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperCell Biology

Ali ShilatifardORCID

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2 papers

Recent·Most cited

POU2AF2/OCA-T1 coactivates POU2F2 and defines a lineage-specific dependency in diffuse large B-cell lymphoma

Rima Tulaiha, Liam Shanley, Amanda Luvisotto, Ping Wang, Vipul Shukla, Zibo Zhao, Feng Yue, Ali Shilatifard, Christopher R. Vakoc, Lu Wang

This study identifies POU2AF2 as a lineage-specific dependency in DLBCL, showing it coactivates POU2F2 to sustain malignant transcriptional networks and innate-like B-cell identity.

bioRxiv · Sep 1, 2026 · PreprintCell Biology

DNA and RNA from the same single nucleus reveals interactions between genomic and transcriptomic landscapes in human tumor samples

Siran Li, Joan Alexander, Jude Kendall, Peter Andrews, Elizabeth Rose, Hope Orjuela, Sarah Park, Craig Podszus, Liam Shanley, Nissim Ranade, Patrick Morris, Danielle Stauder, Daniel Bradford, Michael Ronemus, Arvind Rishi, , Dan Levy

This study introduces hybrid BAG-seq to analyze DNA and RNA from single nuclei in tumor samples, revealing genome-transcriptome interactions and tumor heterogeneity.

bioRxiv · Oct 4, 2023 · PreprintGenomics