Author

Lyndsey D. Lipson

Emory University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:mouse· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:clustering· 1 Research Focus:host-pathogen & immune response· 1 Approach:statistical model· 1

Frequent Co-Authors

Timothy Robert SampsoniD· 3 shared Isabel FraccaroliiD· 2 shared Jianjun ChangiD· 2 shared Lisa Blackmer‐RaynoldsiD· 2 shared Adam M. HamiltoniD· 1 shared Aimee Yang· 1 shared Anna Kozlov· 1 shared C. Anthony GacasaniD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersNeuroscience

Timothy Robert SampsonORCID

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3 papers

Recent·Most cited

Anti-psychotic therapeutics modify gut microbial metabolism and modulate susceptibility to gastrointestinal infection in mice

C. Anthony Gacasan, Jaclyn Weinberg, Lyndsey D. Lipson, Gabrielle M Webster, Dean P. Jones, Timothy Robert Sampson, Rheinallt M. Jones, Michael H. Woodworth

This study shows antipsychotics alter gut microbiota and metabolome, increasing susceptibility to infection in mice.

bioRxiv · Sep 16, 2026 · PreprintMicrobiology

Indigenous gut microbes modulate neural cell state and neurodegenerative disease susceptibility

Lisa Blackmer‐Raynolds, Lyndsey D. Lipson, Anna Kozlov, Aimee Yang, Emily J. Hill, Maureen McGuirk Sampson, Adam M. Hamilton, Isabel Fraccaroli, Sean D. Kelly, Pankaj Chopra, Jianjun Chang, Steven A. Sloan, Timothy Robert Sampson

This study shows that gut microbes influence the transcriptional states of brain cell types and affect neurodegenerative disease susceptibility, with E. coli specifically worsening Alzheimer's disease outcomes in mice.

Cell Systems · Feb 1, 2026Peer-reviewedNeuroscience

APP-KI mice do not display the hallmark age-dependent cognitive decline of amyloid diseases

Lisa Blackmer‐Raynolds, Lyndsey D. Lipson, Isabel Fraccaroli, Ian N Krout, Jianjun Chang, Timothy Robert Sampson

The paper assesses cognitive and motor function in APPSAA and APPWT mice over 12 months, finding no age-related cognitive decline but increased fecal output in APPSAA mice.

bioRxiv · May 24, 2024 · PreprintNeuroscience