Author

C. R. J. Hubert

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 7

Signature Assays, Organisms & Methods

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Assay:metagenomics· 7 Approach:statistical model· 5 Research Focus:ecology & biodiversity· 4 Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

X. Dong· 5 shared C. Greening· 3 shared Y. Peng· 3 shared A. Chakraborty· 2 shared C. Li· 2 shared D. Mayumi· 2 shared D. Pan· 2 shared I. A. Lewis· 2 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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5 shared papersMicrobiology

X. Dong

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7 papers

Recent·Most cited

Viruses in deep-sea cold seep sediments harbor diverse survival mechanisms and remain genetically conserved within species

Y. Peng, Z. Lu, D. Pan, L.-D. Shi, Z. Zhao, Q. Liu, C. Zhang, K. Jia, J. Li, C. R. J. Hubert, X. Dong

The paper examines viral genetic features and evolutionary patterns in deep-sea cold seep sediments, identifying diverse survival strategies and genetic conservation within species.

bioRxiv · Mar 12, 2023Microbiology

Environmental selection influences the microbiome of subsurface petroleum reservoirs

D. A. Gittins, S. Bhatnagar, C. R. J. Hubert

This study analyzes microbial communities in oil reservoirs, finding a functional core but no taxonomic core, and highlights metabolic redundancy and potential for predicting responses to environmental changes.

bioRxiv · Sep 8, 2022 · PreprintMicrobiology

Evolutionary ecology of microbial populations inhabiting deep sea sediments associated with cold seeps

X. Dong, Y. Peng, M. Wang, L. Woods, W. Wu, Y. Wang, X. Xiao, J. Li, K. Jia, C. Greening, Z. Shao, C. R. J. Hubert

The paper examines intraspecies diversity and evolutionary patterns of microbial populations in deep sea cold seep sediments, finding depth-dependent diversification and purifying selection on key metabolic genes.

bioRxiv · May 9, 2022Microbiology

Deep sea sediments associated with cold seeps are a subsurface reservoir of viral diversity

Z. Li, D. Pan, G. Wei, W. Pi, J.-H. Wang, Y. Peng, L. Zhang, Y. Wang, C. R. J. Hubert, X. Dong

The paper analyzes viral diversity in deep sea cold seep sediments, finding high endemism and links to microbial hosts and biogeochemical cycling.

bioRxiv · Sep 8, 2020Microbiology

Thermogenic hydrocarbons fuel a redox stratified subseafloor microbiome in deep sea cold seep sediments

X. Dong, J. E. Rattray, D. C. Campbell, J. Webb, A. Chakraborty, O. Adebayo, S. Matthews, C. Li, M. Fowler, A. Macdonald, R. A. Groves, I. A. Lewis, S. H. Wang, D. Mayumi, C. Greening, C. R. J. Hubert

This study profiles microbial activities in deep sea cold seep sediments, revealing hydrocarbon oxidation pathways and their role in sustaining diverse microbial communities across redox gradients.

bioRxiv · Feb 2, 2020 · PreprintMicrobiology

Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments

X. DONG, C. Greening, J. E. Rattray, A. Chakraborty, M. Chuvochina, D. Mayumi, J. Dolfing, C. Li, J. M. Brooks, B. B. Bernard, R. A. Groves, I. A. Lewis, C. R. J. Hubert

This study investigates microbial energy and carbon acquisition strategies in deep-sea petroleum seeps using metagenomic analysis and geochemical data.

bioRxiv · Jan 28, 2019Microbiology

DNA-foraging bacteria in the seafloor

K. Wasmund, C. Pelikan, M. Watzka, A. Richter, A. C. Noel, C. R. J. Hubert, T. Rattei, T. Hofmann, C. W. Herbold, A. Loy

This study identifies DNA-foraging bacteria in marine sediments and shows they degrade and recycle DNA, contributing to nutrient cycling in the seafloor.

bioRxiv · Jan 23, 2019Microbiology