Author

M. Miyagi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 3 Biochemistry· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:chromatin & epigenetic regulation· 2 Assay:whole-genome sequencing· 2 Approach:biophysical modeling· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1

Frequent Co-Authors

A. J. Blumberg· 2 shared B. Counterman· 1 shared B. J. Clavijo· 1 shared C. D. Jiggins· 1 shared C. Salazar· 1 shared C. Yamashiro· 1 shared D. E. Neafsey· 1 shared D. Jaffe· 1 shared

Activity by Year

2018-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersEvolutionary Biology

A. J. Blumberg

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Author profile →

5 papers

Recent·Most cited

How many ecological niches are defined by the superabundant marine microbe Prochlorococcus?

M. Miyagi, M. Morrison, M. Kirkpatrick

The paper introduces a tree-free likelihood method to identify ecotypes in Prochlorococcus and finds 24 ecotypes in 96 genomes, more than the commonly recognized five.

bioRxiv · Nov 29, 2022 · PreprintEvolutionary Biology

Human immune and gut microbial parameters associated with inter-individual variations in COVID-19 mRNA vaccine-induced immunity

M. Hirota, M. Tamai, S. Yukawa, N. Taira, M. M. Matthews, T. Toma, Y. Seto, M. Yoshida, S. Toguchi, M. Miyagi, T. Mori, H. Tomori, O. Tamai, M. Kina, E. Sakihara, , H. Ishikawa

The paper identifies baseline AP-1 gene expression and gut microbial fucose/rhamnose degradation as factors negatively correlated with BNT162b2 mRNA vaccine-induced T-cell responses.

bioRxiv · Aug 8, 2022 · PreprintImmunology

Expression and purification of Protease Activated Receptor 4 (PAR4) and analysis with histidine hydrogen deuterium exchange.

M. de le Fuente, X. Han, M. Miyagi, M. T. Nieman

This paper expresses and purifies PAR4, then uses His-HDX to analyze conformational changes upon thrombin activation, showing increased solvent protection for specific histidine residues.

bioRxiv · Oct 16, 2019Biochemistry

Genomic architecture and introgression shape a butterfly radiation

N. B. Edelman, P. Frandsen, M. Miyagi, B. J. Clavijo, J. Davey, R. Dikow, G. Garcia Accinelli, S. M. Van Belleghem, N. J. Patterson, D. E. Neafsey, R. J. Challis, S. Kumar, G. R. P. Moreira, C. Salazar, M. Chouteau, , J. Mallet

The paper uses a low-cost genome assembly strategy to study Heliconius butterfly evolution, finding that introgression, not incomplete lineage sorting, explains most non-canonical genetic histories.

bioRxiv · Dec 4, 2018Evolutionary Biology

Fast Estimation of Recombination Rates Using Topological Data Analysis

D. P. Humphreys, M. R. McGuirl, M. Miyagi, A. J. Blumberg

This paper introduces TREE, a method using topological data analysis to estimate recombination rates more accurately and efficiently than previous methods.

bioRxiv · Aug 20, 2018Evolutionary Biology